View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_41 (Length: 218)
Name: NF20787_high_41
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 25871278 - 25871085
Alignment:
| Q |
4 |
tgttgttgactatttggtttgcctgaatgagatatcttgtttataattcaactgttgagtcattcacccaacnnnnnnnnnnnnnnnnnnttcacctaaa |
103 |
Q |
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| T |
25871278 |
tgttgttgactatt-ggtttgcctgaatgagatatattgtttataattcaactgttgagtcattcacccaacaaaaataaaaataaaaaattcacctaaa |
25871180 |
T |
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| Q |
104 |
atttcaactgttgagtgagatccatttacagaaggacattctcaaaaagtgttgtattg-ttttgtataaatgaagcaaaagcattccatggaag |
197 |
Q |
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| T |
25871179 |
atttcaactgttgagtgagatccatttacagaaggacattctcaaaaagtgttgtattgtttttgtataaatgaagcaaaagcattccatggaag |
25871085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 43381754 - 43381579
Alignment:
| Q |
21 |
tttgcctgaatgagatatcttgtttataattcaactgttgagtcattcacccaacnnnnnnnnnnnnnnnnnnttcacctaaaatttcaactgttgagtg |
120 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
43381754 |
tttgcctgaatgagacatcttgtttataattcaactgttgagtcattcacccaacaaaaataaaaataaaaaattcacctaaattttcaactgttgagtg |
43381655 |
T |
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| Q |
121 |
agatccatttacagaaggacattctcaaaaagtgttgtattgttttgtataaatgaagcaaaagcattccatggaa |
196 |
Q |
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| T |
43381654 |
agatccatttacagaaggacattctcaaaaagtgttgtattgttttgtataaatgaagcaaaagcattccatggaa |
43381579 |
T |
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