View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_7 (Length: 492)
Name: NF20787_high_7
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Original strand, 55007358 - 55007811
Alignment:
| Q |
20 |
aacagttggatctcgcacacgtttgtgtcaaacgcgagggtagagagggagggacctttcggcccttacccctctttagtgtctactatgagtcatactt |
119 |
Q |
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| T |
55007358 |
aacagttggatctcacacacgtttgtgtcaaacgcgagggtagagagggagggacctttcggcccttacccctctttagtgtctactatgagtcatactt |
55007457 |
T |
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| Q |
120 |
gacaatttgttgatttaagttttaattacattcaaattttaaaaatgattaccaacaatgggttaatccaaataataagagacttgttgatgattaaaaa |
219 |
Q |
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| T |
55007458 |
gacaatttgttgatttaagttttaattacattcaaaatttaaaaatgattaccaacaatgggttaatccaaataataagagacttgttgatgattaaaaa |
55007557 |
T |
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| Q |
220 |
attaaaattgcatttgacgtgattaaacattttatactactttgcaagctggtaatgtaagtgcagcctagataggattgtgtggatatttcatatgatg |
319 |
Q |
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| T |
55007558 |
attaaaattgcatttgacgtgattaaacattttatactactttgcaagctggtaatgtaagtgcagcctagataggattgtgtggatatttcatatgatg |
55007657 |
T |
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| Q |
320 |
tactgcggatttgaatacacgatgcctatgttcacccaactaattagtgtgtgtatgagttccatctctaaattcttcaaaaccaaaagaacaaactttc |
419 |
Q |
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| T |
55007658 |
tactgcggatttgaatac-cgatgcctatgttcacccaactaattagtgtgtgtatgagttccatctctaaattcttcaaaaccaaaagaacaaactttc |
55007756 |
T |
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| Q |
420 |
atcttgaactatgtactgaaaataataaaaataatttaagatggcatgggtatta |
474 |
Q |
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| T |
55007757 |
atcttgaactatttactgaaaataataaaaataatttaagatggcatgggtatta |
55007811 |
T |
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