View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_10 (Length: 463)
Name: NF20787_low_10
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 23325274 - 23325713
Alignment:
| Q |
17 |
cctttgtctacccctgcaatttgcaccaaaagaaaaataactttgtgttagacaaggtgaatctgaaggatacattcaaattcagtttcatattcgttat |
116 |
Q |
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| T |
23325274 |
cctttgtctacccctgcaatttgcaccaaaagaaaaataactttgtgttagacaaggtgaatctgaaggatacattcaaattcagtttcatattcgttat |
23325373 |
T |
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| Q |
117 |
attgatgttttgtaataatgatgaaaatatggtggtttatatttcaagtttctgttataaactcgatttggtgaaatcaaaacatgaacatgataatgac |
216 |
Q |
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| T |
23325374 |
attgatgttttgtaataatgatgaaaatatggtggtttatatttcaagtttctgttagaaactcgatttggtaaaatcaaaacatgaacatgataatgac |
23325473 |
T |
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| Q |
217 |
tgtggtaactgcaagaatcttttacaacgcgaaatcggaattcacatgacaagactgcaaatatcagaattgagtttcttgcagccacatattcatatag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325474 |
tgtggtaactgcaagaatcttttacaacgcgaaatcggaattcacatgacaagactgcaaatatcagaattgagtttcttgcagccacatattcatatag |
23325573 |
T |
|
| Q |
317 |
acaaatatgagtcgtctgatttcaattctcagttgatagatggactaagaatatgagtcgtctgagttttatccaactatatatcgagatgtgaatatta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23325574 |
acaaatatgagtcgtctgatttcaattctcagttgatagatggactaagaatatgagtcgtctgatttttatccaactatatatcgagatgtgaatatta |
23325673 |
T |
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| Q |
417 |
tattcttccaactttaaggaatctaggtccagaattatct |
456 |
Q |
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||||||||||||||||||||||||||||||| || ||||| |
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| T |
23325674 |
tattcttccaactttaaggaatctaggtccacaaatatct |
23325713 |
T |
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