View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_14 (Length: 378)
Name: NF20787_low_14
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 88 - 363
Target Start/End: Complemental strand, 2258023 - 2257743
Alignment:
| Q |
88 |
tatatatatgtatgcggaaatgcatatttattttgtgatataatactccctacgtctt---tagcagaaatgttgtactaagactatttctgaaaaacaa |
184 |
Q |
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| T |
2258023 |
tatatatatgtatgcggaaatgcatatttattttgtgatatactactccctacgtcttctttagcagaaatgttgtactaagactatttctcaaaaataa |
2257924 |
T |
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| Q |
185 |
caattttagcaaattgacnnnnnnnnaaaa-ttaatatatttgccattatcttaaaacacaattaaagttttaaaaatcacaactaaaatataagaatag |
283 |
Q |
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| T |
2257923 |
caattctagcaaattgacttttctttaaaaattaatatatttgccattatcttaaaacacaattaaagttttaaaaatcacaactaaaacataagaatag |
2257824 |
T |
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| Q |
284 |
tgattgagtgtgacccacatatattaa-nnnnnnnnaacaaaattagaaagtcatgtcaacaagtgtaagtgcatactgat |
363 |
Q |
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| T |
2257823 |
tgattgagtgtgacccacatgtattaatttttttttaacaaaattagaaagtcatgtcaacaagtgtaagtgcatactgat |
2257743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2258160 - 2258065
Alignment:
| Q |
1 |
aagaaagcaggttatttgctcgactgttgccatggtgttaatcagaatattattctacatatgtgtaactgtgaaagtgtgtatgtttatatatat |
96 |
Q |
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| T |
2258160 |
aagaaagcaggttatttgctcgactgttgccatggtgttaatcagaatgttattctacatatgtgtaactgtgaaagtgtgtatgtttatatatat |
2258065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 2257486 - 2257357
Alignment:
| Q |
40 |
aatcagaatattattctacatatgtgtaactgtgaaagtgtgtatgtttatatatatgtatgcggaaatgcatatttattttgtgatataatactcccta |
139 |
Q |
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| T |
2257486 |
aatcaggatgttattcaaaatatgtgtaactgtgaaagtgggtgtgtttatatatatga----ggaaatgcatatttattttgagatataatactcccta |
2257391 |
T |
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| Q |
140 |
cgtctttagcagaaatgttgtactaagactattt |
173 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2257390 |
cgtctttagcagaaatgttgtactaagactattt |
2257357 |
T |
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