View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_16 (Length: 353)
Name: NF20787_low_16
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4997209 - 4996879
Alignment:
| Q |
1 |
gcagggtagcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaa |
100 |
Q |
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| T |
4997209 |
gcagggtagcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaa |
4997110 |
T |
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| Q |
101 |
tcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtgt |
200 |
Q |
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| T |
4997109 |
tcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtgt |
4997010 |
T |
|
| Q |
201 |
ttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997009 |
ttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttcc |
4996910 |
T |
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| Q |
301 |
atttgaacatagtagtgaaaagagaagaatg |
331 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
4996909 |
atttgaacatactagtgaaaagagaagaatg |
4996879 |
T |
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