View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_19 (Length: 330)
Name: NF20787_low_19
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 7340397 - 7340699
Alignment:
| Q |
13 |
attctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacattt |
112 |
Q |
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| T |
7340397 |
attctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatgcttccacttggtaatgcatgagtttttcttgattgaacattt |
7340496 |
T |
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| Q |
113 |
tgtgtgtagtaactgtggaatttaaaaatataagcaaaaaggttcgtgtgtttgtgatgacgaaaaatgagaaaggggaaagggaagttttataaggggt |
212 |
Q |
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| T |
7340497 |
tgtgtgtagtaactgtggaatttaacaatataagcaaaaaggttcgtgtgtttgtgatgatgaaaaatgagaaacgggaaagggaagttttataaggggt |
7340596 |
T |
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| Q |
213 |
tgaagggagtgtgagaaaaaatccaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttct |
312 |
Q |
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| T |
7340597 |
tgaagggagtgtgagaaaaaatctaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcagaggagcatgttct |
7340696 |
T |
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| Q |
313 |
gag |
315 |
Q |
| |
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||| |
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| T |
7340697 |
gag |
7340699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 7300070 - 7299969
Alignment:
| Q |
10 |
attattctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaaca |
109 |
Q |
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| T |
7300070 |
attattctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaaca |
7299971 |
T |
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| Q |
110 |
tt |
111 |
Q |
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|| |
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| T |
7299970 |
tt |
7299969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 7333605 - 7333706
Alignment:
| Q |
10 |
attattctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333605 |
attattctctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaaca |
7333704 |
T |
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| Q |
110 |
tt |
111 |
Q |
| |
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|| |
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| T |
7333705 |
tt |
7333706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 7299809 - 7299741
Alignment:
| Q |
245 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
313 |
Q |
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| T |
7299809 |
gtgtgtggaagaatgttggggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctg |
7299741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 7376330 - 7376402
Alignment:
| Q |
39 |
tgttcttactctcatgtagtagctcc---atgatggttctacttggtaatgcatcagtttctcttgattgaaca |
109 |
Q |
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| T |
7376330 |
tgttcttactctcatgtagtagctccatgatgatggttc-acttggcaatgcatgtgtttctcttgattgaaca |
7376402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 7333867 - 7333935
Alignment:
| Q |
245 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
313 |
Q |
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|||||||||| ||||||| | |||||||| || |||||| ||||||||||||||||| ||| ||||||| |
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| T |
7333867 |
gtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggagaagcgtgttctg |
7333935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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