View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_2 (Length: 595)

Name: NF20787_low_2
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_2
NF20787_low_2
[»] chr7 (8 HSPs)
chr7 (18-349)||(48108306-48108637)
chr7 (345-595)||(48107963-48108213)
chr7 (79-289)||(47926833-47927043)
chr7 (161-280)||(48454171-48454286)
chr7 (412-579)||(47051812-47051976)
chr7 (169-309)||(47052125-47052265)
chr7 (430-537)||(47927266-47927373)
chr7 (21-87)||(47052341-47052407)
[»] chr5 (2 HSPs)
chr5 (198-289)||(39411258-39411349)
chr5 (412-526)||(39403358-39403472)
[»] chr1 (1 HSPs)
chr1 (144-330)||(50458673-50458859)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 48108637 - 48108306
Alignment:
Q  18 gaaagatctattcttcgatatcttcatgcttggaagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtggctctactgttgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48108637 gaaagatctattcttcgatatcttcatgcttggaagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtgtctctactgttgat 48108538  T
Q  118 agatatgtcgatttgaatctatgtacggatgaatttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48108537 agatatgtcgatttgaatctatgtacggatgaatttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtga 48108438  T
Q  218 acttctatataaatagtaaacacaacagcattattgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaag 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48108437 acttctatataaatagtaaacacaacaacattattgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaag 48108338  T
Q  318 cccttatgcacattgcactactcgacgcaatc 349  Q
    ||||||||||||||||||||||||||||||||    
T  48108337 cccttatgcacattgcactactcgacgcaatc 48108306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 345 - 595
Target Start/End: Original strand, 48107963 - 48108213
Alignment:
Q  345 caatcaagtaaaatcaagtttacttccactcggtagagagtttcgtatacgaaatagcaccctatagccttgagatgacatagagatgaacttactatct 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48107963 caatcaagtaaaatcaagtttacttccactcggtagagagtttcgtatacgaaatagcaccctatagccttgagatgacatagagatgaacttactatct 48108062  T
Q  445 ctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataacaaactttcaatgaaagtttcatccagctttgc 544  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48108063 ctggcattaatgatttcaattcacaaaaaagtaagcaaagctcttcaagttgtggacaattagataacaaactttcaatgaaagtttcatccagctttgc 48108162  T
Q  545 actatcaagcgatagagatttcaaattttttaatgtagttaagtcgcaatt 595  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  48108163 actatcaagcgatagagatttcaaattttttaatggagtgaagtcgcaatt 48108213  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 289
Target Start/End: Original strand, 47926833 - 47927043
Alignment:
Q  79 gggtatctcattgaagtccctagtggctctactgttgatagatatgtcgatttgaatctatgtacggatgaatttgtaaaactagtaaaccagtttgtca 178  Q
    |||||||||||||| ||| ||||| ||| | |||||||||||| | |||||||| ||     || ||||||||||||||||| |||| | || |||||||    
T  47926833 gggtatctcattgatgtcactagtcgcttttctgttgatagatgtatcgatttgtataagactaaggatgaatttgtaaaacgagtagatcaatttgtca 47926932  T
Q  179 aaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatggataagttttgcaattgc 278  Q
    | || ||||  || |||  |||| |||||||||| |||| ||||||| ||||| || |||| | || ||  |||||||||||||||||||||||||||||    
T  47926933 agaattttcctggcacagtgatcaattctttcctagtgagcttctatttaaattgtgaacaaagcaacacaattgatcaatggataagttttgcaattgc 47927032  T
Q  279 aaggggagttg 289  Q
    || ||||||||    
T  47927033 aaagggagttg 47927043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 48454286 - 48454171
Alignment:
Q  161 tagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatg 260  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||  |||||||     |||||||||    ||||||||||||    
T  48454286 tagtaaaccagtttgtcaagaattttcaaggaacaaagatcgattctttctttgtgaacttgaatataaa----caacacaacaatgctattgatcaatg 48454191  T
Q  261 gataagttttgcaattgcaa 280  Q
    ||||||||||||||||||||    
T  48454190 gataagttttgcaattgcaa 48454171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 412 - 579
Target Start/End: Original strand, 47051812 - 47051976
Alignment:
Q  412 ccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataa 511  Q
    |||||||||||||||  ||||||||||||||| | ||||   ||||||| | ||||||  |||||||| ||||||||| |||  |||  |||||||| ||    
T  47051812 ccttgagatgacataaggatgaacttactatcacaggca---atgatttgagttcacagcaaattaagaaaagctcttgaagccgtgggcaattagacaa 47051908  T
Q  512 caaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaatg 579  Q
     | |||||||| |||||||||||| || ||||||||  |||| ||||||||| ||| |||||| ||||    
T  47051909 gagactttcaaggaaagtttcatctagttttgcacttacaagtgatagagatctcagatttttgaatg 47051976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 47052265 - 47052125
Alignment:
Q  169 cagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatggataagtt 268  Q
    |||||| |||| || ||||| || ||||  |||||||||||||| || ||||||||| || || || |||| | |  |||||||||||||||| ||||||    
T  47052265 cagtttatcaagaactttcagggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagtt 47052166  T
Q  269 ttgcaattgcaaggggagttgtaaaagtggatctactcttt 309  Q
    |||| |||| ||||||||||| || | ||||||||||||||    
T  47052165 ttgccattgaaaggggagttggaagaatggatctactcttt 47052125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 430 - 537
Target Start/End: Complemental strand, 47927373 - 47927266
Alignment:
Q  430 atgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataacaaactttcaatgaaagt 529  Q
    ||||| ||||||||| ||| ||| || |||| || |||||| ||| ||||||||||||||||||  ||  ||||||||||||||||||||| |||||  |    
T  47927373 atgaatttactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacat 47927274  T
Q  530 ttcatcca 537  Q
    ||||||||    
T  47927273 ttcatcca 47927266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 47052407 - 47052341
Alignment:
Q  21 agatctattcttcgatatcttcatgcttggaagcaatgaggacgatctgctacaatccgggtatctc 87  Q
    |||||||||||| || |||||||||||||||| || |||  ||||||||||||||||||| ||||||    
T  47052407 agatctattctttgacatcttcatgcttggaaccactgaacacgatctgctacaatccggctatctc 47052341  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 39411258 - 39411349
Alignment:
Q  198 gatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatggataagttttgcaattgcaaggggagttg 289  Q
    |||| |||||||||| |||||||||||| ||||| || |||| | || || |||||||||||||||||||||||||||||||| ||||||||    
T  39411258 gatcaattctttcctagtgaacttctatttaaattgtgaacaaagcaacactattgatcaatggataagttttgcaattgcaatgggagttg 39411349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 526
Target Start/End: Complemental strand, 39403472 - 39403358
Alignment:
Q  412 ccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataa 511  Q
    |||||||||| |||| |||||||||||| |||| |||  || ||||||| || | |||| ||  |||  | |||||||||||| ||  |||||||||||     
T  39403472 ccttgagatggcataaagatgaacttacgatctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaattagatac 39403373  T
Q  512 caaactttcaatgaa 526  Q
    ||||||||| |||||    
T  39403372 caaactttctatgaa 39403358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 50458673 - 50458859
Alignment:
Q  144 ggatgaatttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaac 243  Q
    ||||||||||||||| | |||| ||| ||||||||| || ||| |||| ||||| || ||||||||| | ||||| || ||| || || || |||| |      
T  50458673 ggatgaatttgtaaatcgagtagaccggtttgtcaagaattttgaaggcacaaatattgattctttcgtagtgaatttttatttagattgtgaacaaagt 50458772  T
Q  244 agcattattgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaagcccttatgcacat 330  Q
    | || |||||||||||||||||||||||| |||||||| ||||||| || | |  ||||||| |||  |||||| ||||||||||||    
T  50458773 aacaatattgatcaatggataagttttgcgattgcaagaggagttgaaagaatcaatctactttttctaggaaggccttatgcacat 50458859  T

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