View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_20 (Length: 314)
Name: NF20787_low_20
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 32491405 - 32491701
Alignment:
| Q |
1 |
cacaagacgaccttattgttccaacaccaaataaagatttgggaaaagaatacgaagaggtaaatcttcaagccacacaccatgccaaaaagagtattac |
100 |
Q |
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| T |
32491405 |
cacaagactaccttattgttccaacaccaaataaagatttgggaaaagaatacgaagaggtaaattttcaagccacataccatcccaaaaagagtattac |
32491504 |
T |
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| Q |
101 |
cactcttccctannnnnnncctcacaattttaaatcaccccctcccctttccatattttcaacttttcctaaactatataaatccctccaccataaagat |
200 |
Q |
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| T |
32491505 |
cactcttccctattattt-cctcacaattttaaatc-ccccctcccctttccatattttcaacttttcctaaactatatgaatccctccaccataaagat |
32491602 |
T |
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| Q |
201 |
gccaatggcggagactccaacaaagaacaatcaagatgctttccctttccatatttacaacttttcctaaactatatgaatccctccaccataaagatg |
299 |
Q |
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| T |
32491603 |
gccaatggcggagactccaacaaagaacaatcaagatgcttcccctttccatattttcaacttttcctaaactatatgaatccctccaccataaagatg |
32491701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 32491643 - 32491741
Alignment:
| Q |
143 |
tcccctttccatattttcaacttttcctaaactatataaatccctccaccataaagatgccaatggcggagactccaacaaagaacaatcaagatgctt |
241 |
Q |
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| T |
32491643 |
tcccctttccatattttcaacttttcctaaactatatgaatccctccaccataaagatgccaatggcggagactccaataaagaacaatcaagatgctt |
32491741 |
T |
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