View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_22 (Length: 308)

Name: NF20787_low_22
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_22
NF20787_low_22
[»] chr4 (9 HSPs)
chr4 (14-291)||(9030984-9031262)
chr4 (47-291)||(8955134-8955378)
chr4 (75-291)||(8999924-9000140)
chr4 (37-291)||(8979470-8979724)
chr4 (79-281)||(8929167-8929369)
chr4 (67-281)||(8966006-8966220)
chr4 (81-291)||(8900342-8900552)
chr4 (81-291)||(8914247-8914457)
chr4 (42-210)||(9014008-9014177)
[»] chr5 (5 HSPs)
chr5 (81-291)||(20073801-20074011)
chr5 (76-284)||(9400034-9400242)
chr5 (92-129)||(31039236-31039273)
chr5 (92-129)||(31048459-31048496)
chr5 (92-129)||(31052726-31052763)
[»] scaffold0528 (1 HSPs)
scaffold0528 (92-129)||(63-100)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 9031262 - 9030984
Alignment:
Q  14 atatataaaaagcttgatgagcatataataaacaagaaaccaacatagt-tactataaagggatgcatctacatagggatcttagcaacaagacaaagag 112  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9031262 atatataaaaagcttgataaacatataataaacaagaaaccaacatagtatactataaagggatgcatctacatagggatcttagcaacaaggcaaagag 9031163  T
Q  113 gattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagatt 212  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  9031162 gattcttcttgtgttgagtgatccctggcagcattgatgtatcaatatcttcctttaccaacccatctggtaatttccaatcaaatgaataaagaagatt 9031063  T
Q  213 agcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaaagggtattagt 291  Q
     ||||||||||||| |||||| ||||||||||| || |  || |||||||||||||| |||||||||||||||||||||    
T  9031062 ggcaaggataagtttcaatgaggcaactgccatgggtaagccggggcaaattctacggccagctccaaagggtattagt 9030984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 47 - 291
Target Start/End: Complemental strand, 8955378 - 8955134
Alignment:
Q  47 aagaaaccaacatagttactataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacat 146  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||||| || | |||  |||||||||||||||||||||||||||||||||| | |||    
T  8955378 aagaaaccaacatagttaatataaagggatgtatctacttagggatcttggctataaggtaaagaggattcttcttgtgttgagtgatccctggcagcat 8955279  T
Q  147 tgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccata 246  Q
    |  |||||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| || || | |||||||    
T  8955278 ttctgtatcaacatcttcttttaccaacccatctggtaagctccaatcaaatgaatagagaagatttgcaaggataagttccaacgaggcgattgccata 8955179  T
Q  247 ggcatacctgggcaaattctacgaccagctccaaagggtattagt 291  Q
    || ||||| ||||||||||||||||||||||||||||||||||||    
T  8955178 ggtataccggggcaaattctacgaccagctccaaagggtattagt 8955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 75 - 291
Target Start/End: Original strand, 8999924 - 9000140
Alignment:
Q  75 atgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaac 174  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||        
T  8999924 atgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttactgtt 9000023  T
Q  175 ccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccag 274  Q
    |||| ||| ||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9000024 ccatgtggcaatttccaatcaaatgaataaagaagattggcaaggataagttccaatgaggcaactgccataggcatacctgggcaaattctacgaccag 9000123  T
Q  275 ctccaaagggtattagt 291  Q
    |||||||||||||||||    
T  9000124 ctccaaagggtattagt 9000140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 8979724 - 8979470
Alignment:
Q  37 tataataaacaagaaaccaacatagttactataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatcc 136  Q
    |||| |||||| ||||| |||| |||||  |||||||||| |||||| |||||||| || | ||||||  ||||||||||||||||||||||||||||||    
T  8979724 tatattaaacatgaaactaacaaagttaacataaagggatacatctaaatagggatattgggaacaaggtaaagaggattcttcttgtgttgagtgatcc 8979625  T
Q  137 ctggtaacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgc 236  Q
    |||| ||||||   |||||||||||||||||| | || || | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8979624 ctggcaacatttcggtatcaatatcttccttttctaaaccttgtggcaatttccaatcaaaagaatagagaagattagcaaggataagttccaatgatgc 8979525  T
Q  237 aactgccataggcatacctgggcaaattctacgaccagctccaaagggtattagt 291  Q
    ||||||||||| ||| || || |||||||||||||||||||||||||||||||||    
T  8979524 aactgccatagacatgccaggacaaattctacgaccagctccaaagggtattagt 8979470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 79 - 281
Target Start/End: Original strand, 8929167 - 8929369
Alignment:
Q  79 atctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccat 178  Q
    |||||||||||||  || || ||||| || ||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  8929167 atctacatagggactttggctacaaggcagagatgattcttcttgtgttgagtgatccctggcaacatttctgtatcaatatcttcctttaccaacccat 8929266  T
Q  179 ctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctcc 278  Q
     |||||||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||  |||||||||||||||||||| || |||||    
T  8929267 gtggtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctcc 8929366  T
Q  279 aaa 281  Q
    |||    
T  8929367 aaa 8929369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 8966006 - 8966220
Alignment:
Q  67 ataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcct 166  Q
    ||||||||||| ||||||||||  ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| ||   ||||||||||||||||    
T  8966006 ataaagggatgaatctacatagtaatcttggcaaccagacagagaggattcttcttgtgttgagtgatcccaggcaacgtttcagtatcaatatcttcct 8966105  T
Q  167 ttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattct 266  Q
    ||||||| |||| ||||||  |||||||||| ||||| ||||||||||||||||| ||||| | |||||||||| ||||||  |||||||| ||||||||    
T  8966106 ttaccaatccatgtggtaacttccaatcaaaagaataaagaagattagcaaggatcagttctactgatgcaactcccatagatatacctggacaaattct 8966205  T
Q  267 acgaccagctccaaa 281  Q
    |||||| ||||||||    
T  8966206 acgacctgctccaaa 8966220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 81 - 291
Target Start/End: Original strand, 8900342 - 8900552
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   ||||||||||||||||||||  |||||  || ||   ||||||||||||||||||||||  ||||||    
T  8900342 ctacataggaatcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatct 8900441  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 280  Q
    ||||||  ||||||||| || || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  8900442 ggtaattcccaatcaaaggagtatagaagatttgcaaggataacttccaatgatgcaactgccatagacatacctgggcaaattctacgaccggctccaa 8900541  T
Q  281 agggtattagt 291  Q
    |||| ||||||    
T  8900542 agggaattagt 8900552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 291
Target Start/End: Original strand, 8914247 - 8914457
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   ||||||||||||||||||||  |||||  || ||   ||||||||||||||||||| ||  ||||||    
T  8914247 ctacataggaatcttggctgcaaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatct 8914346  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 280  Q
    ||||||  ||||||||| ||||| |||||||| | |||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  8914347 ggtaattcccaatcaaaggaatatagaagattggaaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaa 8914446  T
Q  281 agggtattagt 291  Q
    | || ||||||    
T  8914447 aaggaattagt 8914457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 9014177 - 9014008
Alignment:
Q  42 taaacaagaaaccaacatagttactataaaggg-atgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctgg 140  Q
    |||||| |||||||||||||| || |||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  9014177 taaacatgaaaccaacatagtcacgataaaggtcatgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctgg 9014078  T
Q  141 taacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaaga 210  Q
     ||||||   ||||||||||||| |||||     |||| ||| ||| |||||| ||||||||| ||||||    
T  9014077 caacatttcagtatcaatatctttctttagtgttccatgtggcaatttccaattaaatgaataaagaaga 9014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 291
Target Start/End: Original strand, 20073801 - 20074011
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   |||||| ||||| |||||||  ||||| ||| ||   |||||||||||||||||||| |  ||||||    
T  20073801 ctacataggaatcttggctgcaaggcaaagctcattctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttcctttactagaccatct 20073900  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 280  Q
    ||||||  ||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  20073901 ggtaattcccaatcaaaggaatatagaagatttgcaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaa 20074000  T
Q  281 agggtattagt 291  Q
    |||| ||||||    
T  20074001 agggaattagt 20074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 284
Target Start/End: Original strand, 9400034 - 9400242
Alignment:
Q  76 tgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacc 175  Q
    ||||||||| | |||| ||| |||| ||| |||||| | ||||||||||||||||  |||||||| ||| ||     ||||| ||||||||| |||||||    
T  9400034 tgcatctacgttgggaccttggcaaaaaggcaaagatggttcttcttgtgttgagcaatccctggcaacctttcaaaatcaacatcttccttaaccaacc 9400133  T
Q  176 catctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagc 275  Q
    ||| ||| |||  ||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||  || ||||| |||||||| || ||||     
T  9400134 catgtggcaattcccaatcaaaggaatagaggatattggcaaggataagttccaatgatgcaactgccatagaaatgcctggacaaattcttcgtccaga 9400233  T
Q  276 tccaaaggg 284  Q
    |||||||||    
T  9400234 tccaaaggg 9400242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31039236 - 31039273
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31039236 tcttagcaacaagacagagaggatttttcttgtgttga 31039273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31048459 - 31048496
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31048459 tcttagcaacaagacagagaggatttttcttgtgttga 31048496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31052726 - 31052763
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31052726 tcttagcaacaagacagagaggatttttcttgtgttga 31052763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 100 - 63
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  100 tcttagcaacaagacagagaggatttttcttgtgttga 63  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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