View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_24 (Length: 296)
Name: NF20787_low_24
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 47933172 - 47933002
Alignment:
| Q |
1 |
caatcattttttaaaatggtaaaacattttaaattnnnnnnnt-gaataaggtgaccacctacaatattggtctaccttaatcatttgtggttaaagtta |
99 |
Q |
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| T |
47933172 |
caatcattttttaaaatgattaaacattttaaattaaaaaaattgaataagattgccatctacaatattggtccaccttaatcatttgtggttaaagtta |
47933073 |
T |
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| Q |
100 |
accggaagatatcaaattaatctacgaaaacatttttgggtaaccaaaacataagtttgactagttatgcg |
170 |
Q |
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| T |
47933072 |
accgtaagagatcaaactaactgacgaaaacatttttgggtaaccaaaacataagtttgactaattatgcg |
47933002 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 47932941 - 47932888
Alignment:
| Q |
231 |
gactaacgttaaataagagtcagcaaaatcttttgagtaataaatatatatatt |
284 |
Q |
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|||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
47932941 |
gactaatgttaaataagagtcagcaaagtcttttgagccataaatatatatatt |
47932888 |
T |
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