View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20787_low_25 (Length: 290)
Name: NF20787_low_25
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 3621437 - 3621715
Alignment:
| Q |
1 |
gtgacattgtatataagttttagccaaatggttcatgtgaatacgtacgtacatatgtgacagggtcgtgaacgtttgaatgggaagccgttgtacgtgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621437 |
gtgacattttatataagttttagccaaatgattcatgtgaatacgtacgtacatatgtgacagggtcgtgaacgtttgaatgggaagccgttgtacgtgt |
3621536 |
T |
|
| Q |
101 |
tggtggaatactttgatatatgagctgctgctcgtgaatatggttcg-tcccatacaatcaaattatggatttggaagatgtcatttagtggacactttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3621537 |
tggtggaatactttgatatatgagctgctgctcgtgaatatggttcgttcccatacaatcaaattatggatttgggagatgtcatttagtggacactttc |
3621636 |
T |
|
| Q |
200 |
acattttgagtcccatctaattaattagcttgtagtatgatcaatcaaatcaaattaatgaatttgtatgacccaccct |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621637 |
acattttgagtcccatctaattaattagcttgtagtatgatcaatcaaatcaaattaatgaatttgtatgacccaccct |
3621715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University