View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20787_low_29 (Length: 282)
Name: NF20787_low_29
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 29 - 266
Target Start/End: Original strand, 4776410 - 4776647
Alignment:
| Q |
29 |
aggtcccctccagtaatatatctcttttatttttcttaagagcattaaatattcttatataacaacctaaaaagctagtgcaaaacacacaaaaaatgat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776410 |
aggtcccctccagtaatatatctcttttatttttcttaagagcattaaatattcttatataacaacctaaaaagctagtgcaaaacacacaaaaaatgat |
4776509 |
T |
|
| Q |
129 |
ggctagtgaaggttggccagagccagtgattagagtccaagccttagctgaaagtggcataagctcaatccctcaacatttcatcaaaccaaaatcccaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776510 |
ggctagtgaaggttggccagagccagtgattagagtccaagccttagctgaaagtggcataagctcaatccctcaacatttcatcaaaccaaaatcccaa |
4776609 |
T |
|
| Q |
229 |
agacctaccaaaacaaactctttcactagccaaacttt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776610 |
agacctaccaaaacaaactctttcactagccaaacttt |
4776647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 25179685 - 25179645
Alignment:
| Q |
161 |
gagtccaagccttagctgaaagtggcataagctcaatccct |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25179685 |
gagtccaagccttagctgaaagtggcctaacctcaatccct |
25179645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University