View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_3 (Length: 571)
Name: NF20787_low_3
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 69 - 538
Target Start/End: Original strand, 40227765 - 40228234
Alignment:
| Q |
69 |
ccatggctagaggagaagctaattcactgtaactaaaaatattttcaagagaaaaagtagagtttgtattgtaaaattagtgatgatctcactcacacct |
168 |
Q |
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| T |
40227765 |
ccatggctagaggagaagctaattcactgtaactaaaaatattttcaagagaaaaagtagagtttgtattgtaaaattagtgatgatctcactcacacct |
40227864 |
T |
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| Q |
169 |
agctacgtgaatttcctaagatttgggttcaacacgtgccaagtttgtttgcaatgtcaaagtttggctaaaattaaaatataaagaaaatccatttatt |
268 |
Q |
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| T |
40227865 |
agctacgtgaatttcctaagatttgggttcaacacgtgccaagtttgtttgcaaggtcaaagtttggctaaaattaaaatataaagaaaatccatttatt |
40227964 |
T |
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| Q |
269 |
tatatgtaaaatccatatttaattagccatctttgctatctatatcattcagattcaaggttaaaatggactaagtgtgtgcccctttttagaacaagtt |
368 |
Q |
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| T |
40227965 |
tatatgtaaaatccatatttaattagccatctttgctatctatatcattcagattcaaggttaaaatggactaagtgtgtgcccctttttagaacaagtt |
40228064 |
T |
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| Q |
369 |
aagatttagagctattaagacaaagtgtcatgctcacgatgtagtttactgtctttgtggcatgctctcaatagttacataagattctaaggatcaagcc |
468 |
Q |
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| T |
40228065 |
aagatttagagctattaagacaaagtgtcatgctcacgatgtagtttactgtctttgtggcatgctctcaatagttacataagattctaaggatcaagcc |
40228164 |
T |
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| Q |
469 |
tatatcacccaatccatctaagtgacaacaaaaaactaagataatcattaaacaaaacgaaaagtaataa |
538 |
Q |
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| T |
40228165 |
tatatcacctaatccatctaagtgacaacaaaaaactaagataatcattaaacaaaacgaaaagtaataa |
40228234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 40227689 - 40227735
Alignment:
| Q |
13 |
tgaaggatcaagaataaaaaaggatatacacatatttaacatgaaag |
59 |
Q |
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| T |
40227689 |
tgaaggatcaagaataaaaaaggatatacacatatttaacatgaaag |
40227735 |
T |
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