View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_31 (Length: 265)
Name: NF20787_low_31
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_31 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 46531837 - 46532089
Alignment:
| Q |
11 |
cacagatatgcaagatgtacgcggtctgtttctttaggtaagtcttatagaaattgctcaaaaaggtcttaatatacatcaatagaaaatatctatatgg |
110 |
Q |
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| T |
46531837 |
cacagatatgcaagatgtacgcggtctgtttctttaggtaagtcttatagaaattgctcaaaaaggtcttaatatacatcaatagaaaatatctatatgg |
46531936 |
T |
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| Q |
111 |
gattttgatttaaatgatttattaagtgcagcagactttaccaatcaatatagagtcatatagattacatttaattgtctgatatatgtgtgtgcagtgc |
210 |
Q |
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| T |
46531937 |
gattttgatttaaatgatttattaagtgcagcagactttactaatcaatatatagtcatatagattacatttaattgtctgatata--tgtgtgcagtgc |
46532034 |
T |
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| Q |
211 |
ctcctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacc |
265 |
Q |
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| T |
46532035 |
ctcctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacc |
46532089 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 24599758 - 24599824
Alignment:
| Q |
199 |
tgtgtgcagtgcctcctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacc |
265 |
Q |
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| T |
24599758 |
tgtgtgcagtgcctccagcatactatgctcatttggcagcctacagagctcgatgctacatggaacc |
24599824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 24614356 - 24614290
Alignment:
| Q |
199 |
tgtgtgcagtgcctcctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacc |
265 |
Q |
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| T |
24614356 |
tgtgtgcagtgcctccagcatactatgctcatttggcagcctacagagctcgatgctacatggaacc |
24614290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 24599512 - 24599546
Alignment:
| Q |
17 |
tatgcaagatgtacgcggtctgtttctttaggtaa |
51 |
Q |
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| T |
24599512 |
tatgcaagatgtacgcggtctgtttctgtaggtaa |
24599546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 24614602 - 24614568
Alignment:
| Q |
17 |
tatgcaagatgtacgcggtctgtttctttaggtaa |
51 |
Q |
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| T |
24614602 |
tatgcaagatgtacgcggtctgtttctgtaggtaa |
24614568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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