View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_32 (Length: 263)
Name: NF20787_low_32
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 16723417 - 16723654
Alignment:
| Q |
19 |
aatttgaagctcaaatctttatatttaaatatgatatgatgtgaagcctacttagaagcataacatggagcgagattgggcaaacttagattcacttgct |
118 |
Q |
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| T |
16723417 |
aattttaagctcaaatctttatatttaaatatgatatgatgtgaagcctacttagaagcataacatggagcgagattgggcaaacttagattcacttgct |
16723516 |
T |
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| Q |
119 |
ctcaacatgattgttgagaagttaattgaaccaattgatcacatttggtttggttctgtctgtaaaaattggcactcaattgcaaaccttaatcatcgac |
218 |
Q |
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| T |
16723517 |
ctcaacatgattgttgagaagttaattgaaccaattgatcacatttggtttggttctgtctgtaaaaattggcactcaattgcaaaccttaatcatcgac |
16723616 |
T |
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| Q |
219 |
acaaccaccaattcaggagcaatgtaatgcctatgcta |
256 |
Q |
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| T |
16723617 |
acgaccaccaatttaggagcaatgtaatgcctatgcta |
16723654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 256
Target Start/End: Original strand, 16741874 - 16742043
Alignment:
| Q |
87 |
agcgagattgggcaaacttagattcacttgctctcaacatgattgttgagaagttaattgaaccaattgatcacatttggtttggttctgtctgtaaaaa |
186 |
Q |
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| T |
16741874 |
agcgagactgggcaaacttagattcactcgctctcaacatgattcttgagaagttaactgaaccaattgatcatatttggtttggttctgtctgtaaaaa |
16741973 |
T |
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| Q |
187 |
ttggcactcaattgcaaaccttaatcatcgacacaaccaccaattcaggagcaatgtaatgcctatgcta |
256 |
Q |
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| T |
16741974 |
ttggcactcaattgcaaaccttagtcatcaacacgatcaccaatttagaagcaatataatgcctatgcta |
16742043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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