View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_33 (Length: 259)

Name: NF20787_low_33
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_33
NF20787_low_33
[»] chr6 (1 HSPs)
chr6 (1-241)||(21506012-21506252)
[»] chr8 (3 HSPs)
chr8 (6-241)||(17506914-17507149)
chr8 (11-241)||(10644049-10644279)
chr8 (11-164)||(32711759-32711913)
[»] chr1 (4 HSPs)
chr1 (3-241)||(21529758-21529995)
chr1 (5-241)||(22908000-22908236)
chr1 (39-241)||(44307117-44307320)
chr1 (39-238)||(46883416-46883617)
[»] scaffold0697 (1 HSPs)
scaffold0697 (3-241)||(715-951)
[»] chr3 (3 HSPs)
chr3 (4-205)||(27426778-27426979)
chr3 (13-241)||(34785471-34785698)
chr3 (14-203)||(15761280-15761469)
[»] chr2 (2 HSPs)
chr2 (39-241)||(6051808-6052009)
chr2 (55-241)||(26666955-26667140)
[»] chr7 (2 HSPs)
chr7 (1-241)||(13323826-13324066)
chr7 (140-178)||(9972979-9973016)
[»] chr5 (4 HSPs)
chr5 (1-239)||(5665701-5665939)
chr5 (15-93)||(33319703-33319781)
chr5 (190-241)||(21635671-21635722)
chr5 (190-241)||(21643918-21643969)
[»] chr4 (1 HSPs)
chr4 (39-203)||(13892662-13892829)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21506012 - 21506252
Alignment:
Q  1 acacgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttcc 100  Q
    |||| |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21506012 acactttagatttatggtttatacaactggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacgtattttacttgttcc 21506111  T
Q  101 ctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgg 200  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21506112 ctggaattattttaaaaaaagttcccaggaattcaacaattaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctgg 21506211  T
Q  201 gaaagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
     |||||||||||| |||||| ||||||||||||||||||||    
T  21506212 aaaagttgatacctgggaatcgattttgtaaccctcaaaca 21506252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 17507149 - 17506914
Alignment:
Q  6 ttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctgga 105  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  17507149 ttagatttatggtttatacaacgggggcatttgcgtaattataatgttcattcccaggattctacatcggaaaccaaacctattttacttgttccgtgga 17507050  T
Q  106 attattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaag 205  Q
    ||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17507049 attattttaaaaaaagttcccaggaattaaacaattaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaag 17506950  T
Q  206 ttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    |||||||| |||||||||||||||||||||||||||    
T  17506949 ttgatacctgggaatagattttgtaaccctcaaaca 17506914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 10644049 - 10644279
Alignment:
Q  11 tttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattat 110  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10644049 tttatggtttatacaacgggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacctattttacttgttccctggaattat 10644148  T
Q  111 tttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgat 210  Q
    |||       |||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||    
T  10644149 tttaaaaaaagttcccagaaattaaacaattaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgat 10644248  T
Q  211 acccgggaatagattttgtaaccctcaaaca 241  Q
    ||| |||||||||||||||||||||||||||    
T  10644249 acctgggaatagattttgtaaccctcaaaca 10644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 32711913 - 32711759
Alignment:
Q  11 tttatggtttatacaa-cggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaatta 109  Q
    |||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  32711913 tttatggtttatacaaacaggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacctattttactcgttccctggaatta 32711814  T
Q  110 ttttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatt 164  Q
    ||||       ||||||||||||| ||||||||||||||||||||||||||||||    
T  32711813 ttttaaaaaaagttcccaggaattaaacaattaaccaaacacttttttctatatt 32711759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 21529995 - 21529758
Alignment:
Q  3 acgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccct 102  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  21529995 acgttagatttatggtttatacaacgg-ggcatttgtgtaattataatgttcattcccaggattctacattgcaaaccaaatgtattttacttgttccct 21529897  T
Q  103 ggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctggga 202  Q
    | |||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21529896 gtaattattttaaaaaaagttcccacgaattcaacaattaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctggga 21529797  T
Q  203 aagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  21529796 aagttgatacctgagaatagattttgtaaccctcaaaca 21529758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 22908000 - 22908236
Alignment:
Q  5 gttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctgg 104  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||    
T  22908000 gttagatttatggtttatacaacgggggcatttttgtaattataatggtcattcccaggattttacattgcaaaccaaacctactttacttgttccctgg 22908099  T
Q  105 aattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaa 204  Q
    |||||||||       ||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  22908100 aattattttaaaaaaagttcccaggaattaaacaattaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaa 22908199  T
Q  205 gttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  22908200 gttgatacctgggaataaattttgtaaccctcaaaca 22908236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 44307117 - 44307320
Alignment:
Q  39 tgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattcaaca 138  Q
    |||||||||||||||||||| || ||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       ||||||||||||| ||||    
T  44307117 tgtaattataatgttcattctcatgattctacatctcaaaccaaccatatttcacttattccttggaattattttaaaaaaagttcccaggaattaaaca 44307216  T
Q  139 attaaccaaacac-ttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgatacccgggaatagattttgtaaccctca 237  Q
    ||||||||||||| |||||| ||||||||||| |||||| || ||| ||||||||||||||||||||||| || |  |||||||  ||||| ||||||||    
T  44307217 attaaccaaacactttttttttatatttttctgggaatacaagtttcaccttcacattcctgggaaagttaattcatgggaataagttttgaaaccctca 44307316  T
Q  238 aaca 241  Q
    ||||    
T  44307317 aaca 44307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 46883617 - 46883416
Alignment:
Q  39 tgtaattataatgttcattcccaggattct---acatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattca 135  Q
    ||||||||||||||||||||||||||||||   || || |||||||||||||||| |||| |||| ||||||||||||       |||| |||||||| |    
T  46883617 tgtaattataatgttcattcccaggattcttctacctctcaaaccaaacatatttcacttattccttggaattattttaaaaaaagttcgcaggaattaa 46883518  T
Q  136 acaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgatacccgggaatagattttgtaaccct 235  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||| |||| |||||| ||||| |||||||  ||||||||||||    
T  46883517 acaactaaccaaacacttttttctatatttttctgggaatacaattttcaccttcatatt-ctggaaaagttaatacctgggaataagttttgtaaccct 46883419  T
Q  236 caa 238  Q
    |||    
T  46883418 caa 46883416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 951 - 715
Alignment:
Q  3 acgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccct 102  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  951 acgttagatttatggtttatacaacgg-ggcatttgtgtaattataatgttcattcccaggattctacattgcaaaccaaatgtattttacttgttccct 853  T
Q  103 ggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctggga 202  Q
    | |||||||||       ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  852 gtaattattttaaaaaaagttcccacgaattcaacaattaaccaaacacttttt-ctatatttttctgggaataaaattttaaccttcacattcctggga 754  T
Q  203 aagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  753 aagttgatacctgagaatagattttgtaaccctcaaaca 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 27426778 - 27426979
Alignment:
Q  4 cgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctg 103  Q
    |||||| |||||||||||||||| || ||||  |||||||||| | |||||||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  27426778 cgttagttttatggtttatacaatgggggcacttgtgtaattacagtgttcattcccaggattctacatcacaaaccaaacgtattttacctgttccctg 27426877  T
Q  104 gaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaa 203  Q
    ||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  27426878 gaattattttcaaaaaagttcccaggaattaaacaattaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaa 27426977  T
Q  204 ag 205  Q
    ||    
T  27426978 ag 27426979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 34785698 - 34785471
Alignment:
Q  13 tatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattt 112  Q
    |||||||||||||| || ||||| |||||||||||||| |  ||| | ||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  34785698 tatggtttatacaatgggggcatttgtgtaattataatatcgattactaggtttctacatcgcaaaccaaacatattttacttgtaacctggaattattt 34785599  T
Q  113 tnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgatac 212  Q
    |       ||| ||||||||| |||||||||||||| ||||||||||| || || || |||| |||| ||||||||| | ||||||||| ||||| | ||    
T  34785598 ttaaaaaagttaccaggaattaaacaattaaccaaaaacttttttctagatgttcctgggaa-aaaaatttaacctttaaattcctggggaagttaaaac 34785500  T
Q  213 ccgggaatagattttgtaaccctcaaaca 241  Q
    |  |||||| ||| |||||||||||||||    
T  34785499 ctaggaataaattatgtaaccctcaaaca 34785471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 15761469 - 15761280
Alignment:
Q  14 atggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaa-ttattt 112  Q
    |||||||||||||  | ||||| | |||||||| |||||| ||||  ||||||||||||| ||||| ||||||||||||||| |||  ||||| ||||||    
T  15761469 atggtttatacaataggggcatttatgtaattacaatgtttattcttaggattctacatctcaaactaaacatattttacttattctttggaaattattt 15761370  T
Q  113 tnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaa 203  Q
    |        ||||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||| ||| ||||||| |||||||||||    
T  15761369 taaaaaaa-ttcccagaaattaaacaattaaccaaacgcttttttctacatttttctgggaataaaactttcaccttcatattcctgggaa 15761280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 6051808 - 6052009
Alignment:
Q  39 tgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattcaaca 138  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       |||||| |||||| ||||    
T  6051808 tgtaattataatgttcattcccaggattctacatctcaaaccaaccatatttcacttattccttggaattattttaaaaaa-gttccctggaattaaaca 6051906  T
Q  139 attaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgatacccgggaatagattttgtaaccctcaa 238  Q
    |||||||||||||||| || |||||||| ||||||||| || ||| |||||||||||| |||||||||| || ||  ||||||  ||||| |||||||||    
T  6051907 attaaccaaacactttcttttatattttcctaggaatacaagttttaccttcacattcgtgggaaagttaattccttggaataagttttgaaaccctcaa 6052006  T
Q  239 aca 241  Q
    |||    
T  6052007 aca 6052009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 26666955 - 26667140
Alignment:
Q  55 attcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttt 154  Q
    ||||||||||||||||||| ||| ||||||||||||||  | |||| ||||||||||||        |||| ||||||| ||||||||||||||||| ||    
T  26666955 attcccaggattctacatctcaagccaaacatattttatctattccttggaattattttaaaacaa-ttcctaggaattaaacaattaaccaaacacctt 26667053  T
Q  155 tttctatatttttctaggaataaaattttaaccttcacattcctgggaaagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||||| |  |||||  |||||| |||||||||||||||||||    
T  26667054 tttctatattttcctgggaataaaattttcaccttcacattcctgggaaaatgaatacctaggaataaattttgtaaccctcaaaca 26667140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13324066 - 13323826
Alignment:
Q  1 acacgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggatt-ctacatcgcaaaccaaacatattttacttgttc 99  Q
    ||||||| ||||||||||||||| ||    ||||| ||||||||||||||||| ||||| ||| || |||| | |||  |||||||||||||   | |||    
T  13324066 acacgttggatttatggtttatataataagggcatttgtgtaattataatgtttattcctaggttttctaccttgcag-ccaaacatattttttctattc 13323968  T
Q  100 cctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctg 199  Q
    | ||||||||||||       ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||  |||| |||||||||    
T  13323967 cttggaattattttaaaagaagttcccaggaattaaacaattaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctg 13323868  T
Q  200 ggaaagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    || ||||| || || ||||||| |||||||||||||||||||    
T  13323867 ggtaagttaattcctgggaataaattttgtaaccctcaaaca 13323826  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 9973016 - 9972979
Alignment:
Q  140 ttaaccaaacacttttttctatatttttctaggaataaa 178  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9973016 ttaaccaaacacttttttc-atatttttctaggaataaa 9972979  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5665939 - 5665701
Alignment:
Q  1 acacgttagatttatggtttatacaacggaggcatctgtgtaattataatgttcattcccaggatt-ctacatcgcaaaccaaacatattttacttgttc 99  Q
    ||||||||||||||||||||||| ||    ||||| ||||||||||||||||| ||||| ||| || |||| | |||  |||||||||||||   | |||    
T  5665939 acacgttagatttatggtttatataataagggcatttgtgtaattataatgtttattccaaggttttctaccttgcag-ccaaacatattttttctattc 5665841  T
Q  100 cctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacacttttttctatatttttctaggaataaaattttaaccttcacattcctg 199  Q
    | ||||||||||||       |||||||||||||  |||||||||||||||||||||||| |||||| || ||||||||| |||  |||| |||||||||    
T  5665840 cttggaattattttaaaagaagttcccaggaattacacaattaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctg 5665741  T
Q  200 ggaaagttgatacccgggaatagattttgtaaccctcaaa 239  Q
    || ||||| || || ||||||| |||||||||||||||||    
T  5665740 ggtaagttaattcctgggaataaattttgtaaccctcaaa 5665701  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 33319781 - 33319703
Alignment:
Q  15 tggtttatacaacggaggcatctgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttac 93  Q
    ||||||||||||  | || || |||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  33319781 tggtttatacaataggggtatttgtgtacttataatgttcattcgcaggattctacattgcaagccaaacatattttac 33319703  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 21635722 - 21635671
Alignment:
Q  190 cacattcctgggaaagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    |||||||||| |||||||||||||   ||||| |||||||||||||||||||    
T  21635722 cacattcctgagaaagttgataccgaagaataaattttgtaaccctcaaaca 21635671  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 21643969 - 21643918
Alignment:
Q  190 cacattcctgggaaagttgatacccgggaatagattttgtaaccctcaaaca 241  Q
    |||||||||| |||||||||||||   ||||| |||||||||||||||||||    
T  21643969 cacattcctgagaaagttgataccgaagaataaattttgtaaccctcaaaca 21643918  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 13892829 - 13892662
Alignment:
Q  39 tgtaattataatgttcattcccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattcaaca 138  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       ||| ||||||||| ||||    
T  13892829 tgtaattataatgttcattcctaggattctacatctcaaaccaaccatatttcacttattccttggaattattttaaaaaaagtttccaggaattaaaca 13892730  T
Q  139 attaaccaaacacttttttct---atatttttctaggaataaaattttaaccttcacattcctgggaa 203  Q
    ||||||||||||||||||| |   |||||||  |  ||||| || ||| |||||||||||||||||||    
T  13892729 attaaccaaacactttttttttttatattttcttgagaatacaagtttcaccttcacattcctgggaa 13892662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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