View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_35 (Length: 249)

Name: NF20787_low_35
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_35
NF20787_low_35
[»] chr4 (9 HSPs)
chr4 (14-232)||(9031043-9031262)
chr4 (47-230)||(8955195-8955378)
chr4 (79-230)||(8929167-8929318)
chr4 (37-232)||(8979529-8979724)
chr4 (75-232)||(8999924-9000081)
chr4 (67-227)||(8966006-8966166)
chr4 (42-210)||(9014008-9014177)
chr4 (81-232)||(8900342-8900493)
chr4 (81-227)||(8914247-8914393)
[»] chr5 (5 HSPs)
chr5 (76-232)||(9400034-9400190)
chr5 (81-227)||(20073801-20073947)
chr5 (92-129)||(31039236-31039273)
chr5 (92-129)||(31048459-31048496)
chr5 (92-129)||(31052726-31052763)
[»] scaffold0528 (1 HSPs)
scaffold0528 (92-129)||(63-100)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 9031262 - 9031043
Alignment:
Q  14 atatataaaaagcttgatgagcatataataaacaagaaaccaacatagt-tactataaagggatgcatctacatagggatcttagcaacaagacaaagag 112  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9031262 atatataaaaagcttgataaacatataataaacaagaaaccaacatagtatactataaagggatgcatctacatagggatcttagcaacaaggcaaagag 9031163  T
Q  113 gattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagatt 212  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  9031162 gattcttcttgtgttgagtgatccctggcagcattgatgtatcaatatcttcctttaccaacccatctggtaatttccaatcaaatgaataaagaagatt 9031063  T
Q  213 agcaaggataagttccaatg 232  Q
     ||||||||||||| |||||    
T  9031062 ggcaaggataagtttcaatg 9031043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 8955378 - 8955195
Alignment:
Q  47 aagaaaccaacatagttactataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacat 146  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||||| || | |||  |||||||||||||||||||||||||||||||||| | |||    
T  8955378 aagaaaccaacatagttaatataaagggatgtatctacttagggatcttggctataaggtaaagaggattcttcttgtgttgagtgatccctggcagcat 8955279  T
Q  147 tgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaa 230  Q
    |  |||||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  8955278 ttctgtatcaacatcttcttttaccaacccatctggtaagctccaatcaaatgaatagagaagatttgcaaggataagttccaa 8955195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 230
Target Start/End: Original strand, 8929167 - 8929318
Alignment:
Q  79 atctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccat 178  Q
    |||||||||||||  || || ||||| || ||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  8929167 atctacatagggactttggctacaaggcagagatgattcttcttgtgttgagtgatccctggcaacatttctgtatcaatatcttcctttaccaacccat 8929266  T
Q  179 ctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaa 230  Q
     |||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  8929267 gtggtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaa 8929318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 8979724 - 8979529
Alignment:
Q  37 tataataaacaagaaaccaacatagttactataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatcc 136  Q
    |||| |||||| ||||| |||| |||||  |||||||||| |||||| |||||||| || | ||||||  ||||||||||||||||||||||||||||||    
T  8979724 tatattaaacatgaaactaacaaagttaacataaagggatacatctaaatagggatattgggaacaaggtaaagaggattcttcttgtgttgagtgatcc 8979625  T
Q  137 ctggtaacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatg 232  Q
    |||| ||||||   |||||||||||||||||| | || || | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8979624 ctggcaacatttcggtatcaatatcttccttttctaaaccttgtggcaatttccaatcaaaagaatagagaagattagcaaggataagttccaatg 8979529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 8999924 - 9000081
Alignment:
Q  75 atgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaac 174  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||        
T  8999924 atgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttactgtt 9000023  T
Q  175 ccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatg 232  Q
    |||| ||| ||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  9000024 ccatgtggcaatttccaatcaaatgaataaagaagattggcaaggataagttccaatg 9000081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 8966006 - 8966166
Alignment:
Q  67 ataaagggatgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcct 166  Q
    ||||||||||| ||||||||||  ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| ||   ||||||||||||||||    
T  8966006 ataaagggatgaatctacatagtaatcttggcaaccagacagagaggattcttcttgtgttgagtgatcccaggcaacgtttcagtatcaatatcttcct 8966105  T
Q  167 ttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttc 227  Q
    ||||||| |||| ||||||  |||||||||| ||||| ||||||||||||||||| |||||    
T  8966106 ttaccaatccatgtggtaacttccaatcaaaagaataaagaagattagcaaggatcagttc 8966166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 9014177 - 9014008
Alignment:
Q  42 taaacaagaaaccaacatagttactataaaggg-atgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctgg 140  Q
    |||||| |||||||||||||| || |||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  9014177 taaacatgaaaccaacatagtcacgataaaggtcatgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctgg 9014078  T
Q  141 taacattgatgtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaaga 210  Q
     ||||||   ||||||||||||| |||||     |||| ||| ||| |||||| ||||||||| ||||||    
T  9014077 caacatttcagtatcaatatctttctttagtgttccatgtggcaatttccaattaaatgaataaagaaga 9014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 8900342 - 8900493
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   ||||||||||||||||||||  |||||  || ||   ||||||||||||||||||||||  ||||||    
T  8900342 ctacataggaatcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatct 8900441  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatg 232  Q
    ||||||  ||||||||| || || |||||||| |||||||||| ||||||||    
T  8900442 ggtaattcccaatcaaaggagtatagaagatttgcaaggataacttccaatg 8900493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 227
Target Start/End: Original strand, 8914247 - 8914393
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   ||||||||||||||||||||  |||||  || ||   ||||||||||||||||||| ||  ||||||    
T  8914247 ctacataggaatcttggctgcaaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatct 8914346  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttc 227  Q
    ||||||  ||||||||| ||||| |||||||| | ||||||||||||    
T  8914347 ggtaattcccaatcaaaggaatatagaagattggaaaggataagttc 8914393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 9400034 - 9400190
Alignment:
Q  76 tgcatctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacc 175  Q
    ||||||||| | |||| ||| |||| ||| |||||| | ||||||||||||||||  |||||||| ||| ||     ||||| ||||||||| |||||||    
T  9400034 tgcatctacgttgggaccttggcaaaaaggcaaagatggttcttcttgtgttgagcaatccctggcaacctttcaaaatcaacatcttccttaaccaacc 9400133  T
Q  176 catctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatg 232  Q
    ||| ||| |||  ||||||||| |||||||| | ||| |||||||||||||||||||    
T  9400134 catgtggcaattcccaatcaaaggaatagaggatattggcaaggataagttccaatg 9400190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 227
Target Start/End: Original strand, 20073801 - 20073947
Alignment:
Q  81 ctacatagggatcttagcaacaagacaaagaggattcttcttgtgttgagtgatccctggtaacattgatgtatcaatatcttcctttaccaacccatct 180  Q
    ||||||||| ||||| ||  |||| |||||   |||||| ||||| |||||||  ||||| ||| ||   |||||||||||||||||||| |  ||||||    
T  20073801 ctacataggaatcttggctgcaaggcaaagctcattctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttcctttactagaccatct 20073900  T
Q  181 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttc 227  Q
    ||||||  ||||||||| ||||| |||||||| ||||||||||||||    
T  20073901 ggtaattcccaatcaaaggaatatagaagatttgcaaggataagttc 20073947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31039236 - 31039273
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31039236 tcttagcaacaagacagagaggatttttcttgtgttga 31039273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31048459 - 31048496
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31048459 tcttagcaacaagacagagaggatttttcttgtgttga 31048496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31052726 - 31052763
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  31052726 tcttagcaacaagacagagaggatttttcttgtgttga 31052763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 100 - 63
Alignment:
Q  92 tcttagcaacaagacaaagaggattcttcttgtgttga 129  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  100 tcttagcaacaagacagagaggatttttcttgtgttga 63  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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