View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_39 (Length: 235)

Name: NF20787_low_39
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_39
NF20787_low_39
[»] chr8 (5 HSPs)
chr8 (116-218)||(16343570-16343672)
chr8 (16-95)||(16343664-16343743)
chr8 (100-146)||(10538281-10538327)
chr8 (113-154)||(30880719-30880760)
chr8 (37-149)||(6162457-6162569)
[»] chr5 (1 HSPs)
chr5 (61-218)||(12042546-12042703)
[»] chr3 (2 HSPs)
chr3 (168-214)||(49286080-49286126)
chr3 (43-125)||(9754414-9754496)
[»] chr7 (1 HSPs)
chr7 (178-218)||(8558377-8558417)
[»] scaffold0196 (1 HSPs)
scaffold0196 (168-203)||(30770-30805)
[»] chr2 (1 HSPs)
chr2 (110-141)||(31437712-31437743)
[»] scaffold0023 (1 HSPs)
scaffold0023 (112-149)||(138709-138746)
[»] chr4 (1 HSPs)
chr4 (113-154)||(18621191-18621232)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 16343672 - 16343570
Alignment:
Q  116 ttccttggcaattaaggaacagatgggagaactgcttgcttatgattagtagtatgcacttcatgatcactcacatctttagagaaggaaatcactgtgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16343672 ttccttggcaattaaggaacagatgggagaactgcttgcttatgattagtagtatgcacttcatgatcactcacatctttagagaaggaaaacactgtgc 16343573  T
Q  216 aga 218  Q
    |||    
T  16343572 aga 16343570  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 16343743 - 16343664
Alignment:
Q  16 attttggctattaagtgtgctcatcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggc 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16343743 attttggctattgagtgtgctcatcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggc 16343664  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 10538281 - 10538327
Alignment:
Q  100 aagtcatcacacattgttccttggcaattaaggaacagatgggagaa 146  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||    
T  10538281 aagttatcacacattgttccttggcaattaaagaacggatgggagaa 10538327  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 30880760 - 30880719
Alignment:
Q  113 ttgttccttggcaattaaggaacagatgggagaactgcttgc 154  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  30880760 ttgttccttggcaattaagaaacatatgggagaactgcttgc 30880719  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 6162569 - 6162457
Alignment:
Q  37 catcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggcaattaaggaaca 136  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||||||||||| | ||  ||||| ||||| ||  || | ||||||||||||||  | |||||||    
T  6162569 catcaaaaaaactggcataacttttggcttgaaactgactctatgctagtttttttggccttcaaatctgcaaagattgttccttggcatctgaggaaca 6162470  T
Q  137 gatgggagaactg 149  Q
    | ||||| |||||    
T  6162469 ggtgggacaactg 6162457  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 12042703 - 12042546
Alignment:
Q  61 tggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggcaattaaggaacagatgggagaactgcttgcttatga 160  Q
    |||||||  |||||||| ||||| ||||||||||| || |||||| | || | ||| ||||||||||| | ||| ||||| || || |||||||||||||    
T  12042703 tggattgacactgactcaatgctagcttccttggcatttaagtcaccccatactgtcccttggcaattgaagaatagatgagaaaattgcttgcttatga 12042604  T
Q  161 ttagtagtatgcacttcatgatcactcacatctttagagaaggaaatcactgtgcaga 218  Q
    | |||| |||||| || ||||| ||||| |||||||||||||| ||| | ||||||||    
T  12042603 tcagtaatatgcatttgatgattactcatatctttagagaaggtaattattgtgcaga 12042546  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 49286126 - 49286080
Alignment:
Q  168 tatgcacttcatgatcactcacatctttagagaaggaaatcactgtg 214  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  49286126 tatgcacttcatgattactcacatctttagagaaggtaatcattgtg 49286080  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 9754414 - 9754496
Alignment:
Q  43 agaaactggaataacttgtggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggca 125  Q
    |||||||||||||| ||||||||||  ||||||||||   | ||| |||||||| |||||||||| || || ||||| |||||    
T  9754414 agaaactggaataatttgtggattgagactgactctagattagctaccttggctatcaagtcatctcatatagttccctggca 9754496  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 8558417 - 8558377
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgcaga 218  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  8558417 atgatcactcacatctatagggaaggaaatcactgtgcaga 8558377  T

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Target: scaffold0196 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 30770 - 30805
Alignment:
Q  168 tatgcacttcatgatcactcacatctttagagaagg 203  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30770 tatgcacttcatgattactcacatctttagagaagg 30805  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 31437743 - 31437712
Alignment:
Q  110 acattgttccttggcaattaaggaacagatgg 141  Q
    ||||||||||||||||||||||||||||||||    
T  31437743 acattgttccttggcaattaaggaacagatgg 31437712  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 138746 - 138709
Alignment:
Q  112 attgttccttggcaattaaggaacagatgggagaactg 149  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  138746 attgttccttggcaattaagaaacagatgggaaaactg 138709  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 18621191 - 18621232
Alignment:
Q  113 ttgttccttggcaattaaggaacagatgggagaactgcttgc 154  Q
    |||||||||||||||| || ||||||||||| ||||||||||    
T  18621191 ttgttccttggcaattgagaaacagatgggaaaactgcttgc 18621232  T

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