View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_40 (Length: 234)
Name: NF20787_low_40
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9933092 - 9932874
Alignment:
| Q |
1 |
ttgggctccaattgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgtcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9933092 |
ttgggctccaattgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgttaat |
9932993 |
T |
|
| Q |
101 |
ttccaaacaagtgccatttccatttttgttcattctcttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9932992 |
ttccaaacaagtgccatttccatttttgttcattcccttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggtt |
9932893 |
T |
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| Q |
201 |
aagtgatcatccacctatg |
219 |
Q |
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||||||||||||||||||| |
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| T |
9932892 |
aagtgatcatccacctatg |
9932874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9938054 - 9937847
Alignment:
| Q |
1 |
ttgggctccaattgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgtcaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9938054 |
ttgggctccaattgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctaccaggcaaaggcagggtggtggaatttgtcaat |
9937955 |
T |
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| Q |
101 |
ttccaaacaagtgccatttccatttttgttcattctcttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggtt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| | ||||||| |
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| T |
9937954 |
ttccaaacaagtgctatttccatttttgttcattcccttctcttctttggatttatggttatctttattgttgccattgatgttcatatctacagtggtt |
9937855 |
T |
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| Q |
201 |
aagtgatc |
208 |
Q |
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|||||||| |
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| T |
9937854 |
aagtgatc |
9937847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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