View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_41 (Length: 223)

Name: NF20787_low_41
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_41
NF20787_low_41
[»] chr4 (7 HSPs)
chr4 (62-205)||(44161808-44161949)
chr4 (62-205)||(14174161-14174302)
chr4 (62-205)||(14178915-14179056)
chr4 (62-205)||(28611568-28611709)
chr4 (62-205)||(28606806-28606947)
chr4 (62-200)||(11104696-11104829)
chr4 (62-207)||(48826702-48826841)
[»] chr1 (1 HSPs)
chr1 (61-205)||(34907363-34907504)
[»] chr8 (2 HSPs)
chr8 (62-205)||(12930900-12931040)
chr8 (62-205)||(12935646-12935786)
[»] chr7 (4 HSPs)
chr7 (62-205)||(37040426-37040567)
chr7 (62-199)||(15290458-15290594)
chr7 (62-147)||(12099276-12099361)
chr7 (62-147)||(12084666-12084751)
[»] chr2 (1 HSPs)
chr2 (62-207)||(8539407-8539548)
[»] chr5 (3 HSPs)
chr5 (62-205)||(29106878-29107016)
chr5 (62-205)||(42910993-42911131)
chr5 (62-142)||(38994699-38994779)
[»] chr3 (2 HSPs)
chr3 (62-144)||(51302937-51303019)
chr3 (158-198)||(51302304-51302344)
[»] chr6 (1 HSPs)
chr6 (62-121)||(2100199-2100258)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 44161949 - 44161808
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaa--tgaa 44161852  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44161851 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 44161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 14174302 - 14174161
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||          ||||    
T  14174302 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaa--tgaa 14174205  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14174204 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 14174161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 14179056 - 14178915
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||          ||||    
T  14179056 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaa--tgaa 14178959  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14178958 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 14178915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 28611568 - 28611709
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||    
T  28611568 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaa--tgaa 28611665  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28611666 caccaatatttaacgtgaaaaaccctctaataccgagggaaaaa 28611709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 28606806 - 28606947
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         |  ||    
T  28606806 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatt--aa 28606903  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28606904 caccaatatttaacgtgaaaaaccctctaataccgagggaaaaa 28606947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 11104829 - 11104696
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaa-----tgaa 11104735  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgaggg 200  Q
    |||||||||||||| | ||||| ||||||||| ||||||    
T  11104734 caccaatatttaacatagaaaatcctctaatatcgaggg 11104696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 48826702 - 48826841
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    ||||||| |||||||||||||||  | |||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||           |||    
T  48826702 tgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaa----gaa 48826795  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaatc 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  48826796 caccaatatttaacgtggaaaatcctctaataccgagggaaaaatc 48826841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 34907504 - 34907363
Alignment:
Q  61 gtgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttga 160  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          |||    
T  34907504 gtgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaa---tga 34907408  T
Q  161 acaccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34907407 acaccaatatttaacgtggaaaaccctctaataccgagggaaaaa 34907363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 12931040 - 12930900
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||    
T  12931040 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaa---tgaa 12930944  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12930943 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 12930900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 12935786 - 12935646
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||          ||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaa---tgaa 12935690  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12935689 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 12935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 37040426 - 37040567
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||          ||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaa--tgaa 37040523  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37040524 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 37040567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 15290594 - 15290458
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatcc-aaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttga 160  Q
    |||||||||||||||||||||||  | |||||||||||||| |||||||| |||||||||||||||||||||||||||  |||||||          |||    
T  15290594 tgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaa--tga 15290497  T
Q  161 acaccaatatttaacgtggaaaaccctctaataccgagg 199  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15290496 acaccaatatttaacgtggaaaaccctctaataccgagg 15290458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 12099361 - 12099276
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgat 147  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||  ||||||||||| || || |||||||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgat 12099276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 12084751 - 12084666
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgat 147  Q
    |||||||||| |||||||||||   || ||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagcgat 12084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 8539548 - 8539407
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | ||          ||||    
T  8539548 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaa----tgaa 8539453  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaatc 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  8539452 catcaatatttaacgtggaaaaccctctaataccgagggaaaaatc 8539407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 29106878 - 29107016
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    ||||||| |||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |          ||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaa-----tgaa 29106972  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29106973 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 29107016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 42910993 - 42911131
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgatnnnnnnnnnttgaa 161  Q
    |||||||||||||||||||||||  |||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | ||||          ||||    
T  42910993 tgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaa-----tgaa 42911087  T
Q  162 caccaatatttaacgtggaaaaccctctaataccgagggaaaaa 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  42911088 caccaatatttaacatggaaaaccctctaataccgagggaaaaa 42911131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 38994699 - 38994779
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 142  Q
    ||||||||| ||||| ||||| | ||||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994699 tgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 51303019 - 51302937
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 144  Q
    ||||||| ||||||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303019 tgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 51302344 - 51302304
Alignment:
Q  158 tgaacaccaatatttaacgtggaaaaccctctaataccgag 198  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaataccgag 51302304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 2100199 - 2100258
Alignment:
Q  62 tgttgggctcgacgagcttaacgttagtgtaaattaaaattccaaaatccaaaagagatt 121  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||| || ||||||||    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatt 2100258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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