View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_44 (Length: 213)
Name: NF20787_low_44
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 43052326 - 43052417
Alignment:
| Q |
19 |
aagtttaactctgtcgtcaatcataataaaatcttattgaatggcttgctaacaaaatgcattttcttgttccatggagatttattattagg |
110 |
Q |
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| T |
43052326 |
aagtttaactctgtcgtcaatcataataaaatcttattgaatggcttgcaaacaaaatgcattttcttgttccatggagatttattattagg |
43052417 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 43052453 - 43052494
Alignment:
| Q |
157 |
tctaatgcagttgttgggaatttaatcataatgatcagtatt |
198 |
Q |
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| T |
43052453 |
tctaatgcagatgttaggaatttaatcataatgatcagtatt |
43052494 |
T |
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