View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_46 (Length: 203)
Name: NF20787_low_46
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_46 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 103736 - 103554
Alignment:
| Q |
1 |
atggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaat |
100 |
Q |
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| T |
103736 |
atggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaat |
103637 |
T |
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| Q |
101 |
taaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttct |
183 |
Q |
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| T |
103636 |
taaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttct |
103554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 164696 - 164520
Alignment:
| Q |
1 |
atggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaat |
100 |
Q |
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| T |
164696 |
atggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctat------gttaaaaaggatgtgtaatttcacacattgtgatcaat |
164603 |
T |
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| Q |
101 |
taaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttct |
183 |
Q |
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| T |
164602 |
taaagataaagactctaacctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttct |
164520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 92662 - 92747
Alignment:
| Q |
98 |
aattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttct |
183 |
Q |
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| T |
92662 |
aattagagacaaagagcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttct |
92747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 13052551 - 13052519
Alignment:
| Q |
111 |
gactctcacctttgcacataggtgacgtgattt |
143 |
Q |
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| T |
13052551 |
gactctcacctttgcacattggtgacgtgattt |
13052519 |
T |
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