View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_6 (Length: 493)
Name: NF20787_low_6
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 290 - 484
Target Start/End: Original strand, 10772395 - 10772592
Alignment:
| Q |
290 |
attccctgaaaaattgtgttacctatttaaatttagtcatccaaacatattcttaggatttt-gtttaataaagtttcaatgatttatgctctggaaatt |
388 |
Q |
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| T |
10772395 |
attccctgaaaaattgtgttacctatttaaatttattcatccaaacatattcttaagatttttgtttaataaagtttcaatgatttatgctcgggaaatt |
10772494 |
T |
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| Q |
389 |
tgtaaaaaatatgattgcgaaattccaaaaattttaaaaactctga--ttttgttttattctaacaacgtattccttggagatttcaggaagtataat |
484 |
Q |
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| T |
10772495 |
tgtaaaaaatatgattgcaatatttcagaaattttaaaaactctgatttttttttttattctaacaacgtattccttggggatttcaggaagtataat |
10772592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 10771787 - 10772027
Alignment:
| Q |
20 |
taacaaagcatctgatgctctttgagcaatctaatgttccaaagagcaccgattatcacatttactgcaatagtagttcttattctgaccgaaactgaca |
119 |
Q |
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| T |
10771787 |
taacaaagcatctgatgctatttgagcaatctaatgttccaaagagcaccaattatcacatttactgcaacagtagttcttattttgaccgaaactgaca |
10771886 |
T |
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| Q |
120 |
aatt---cagtttcttag---------taata-----ta-acaaattacatgaggatttgatatccctaataatataacaagggagaatataactattat |
201 |
Q |
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| T |
10771887 |
aattgatcagtttcttaaattaccgtttaagaagttgtacacaaattacatgtggatttgatatccctaataatataacaagggagaatataactattat |
10771986 |
T |
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| Q |
202 |
ttatcattgtcgactaatataatcaacaaattgttaaaaat |
242 |
Q |
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| T |
10771987 |
ttattattgtcgactaatataatcaacaaattgttaaaaat |
10772027 |
T |
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