View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_low_8 (Length: 483)

Name: NF20787_low_8
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_low_8
NF20787_low_8
[»] chr4 (7 HSPs)
chr4 (14-467)||(5089117-5089565)
chr4 (260-319)||(18653753-18653812)
chr4 (260-319)||(18722349-18722408)
chr4 (260-319)||(18687889-18687948)
chr4 (260-311)||(18697685-18697736)
chr4 (260-319)||(18729771-18729830)
chr4 (260-311)||(18677843-18677894)
[»] chr6 (26 HSPs)
chr6 (261-435)||(26938949-26939123)
chr6 (260-371)||(26637476-26637586)
chr6 (260-371)||(26743442-26743552)
chr6 (260-467)||(26825727-26825934)
chr6 (271-371)||(26648355-26648455)
chr6 (271-371)||(26754323-26754423)
chr6 (260-392)||(26863505-26863637)
chr6 (260-371)||(26813405-26813516)
chr6 (260-366)||(27602870-27602976)
chr6 (265-366)||(27216371-27216472)
chr6 (268-371)||(26885989-26886092)
chr6 (260-366)||(26657883-26657989)
chr6 (260-366)||(26763854-26763960)
chr6 (267-312)||(26850576-26850621)
chr6 (271-332)||(27609319-27609380)
chr6 (271-332)||(27696788-27696849)
chr6 (267-315)||(26960990-26961038)
chr6 (267-315)||(26979307-26979355)
chr6 (268-315)||(27663417-27663464)
chr6 (268-314)||(25075787-25075833)
chr6 (271-337)||(27716693-27716759)
chr6 (271-332)||(27680884-27680945)
chr6 (54-123)||(29523508-29523577)
chr6 (271-315)||(26625146-26625190)
chr6 (271-315)||(26731123-26731167)
chr6 (271-335)||(31286475-31286539)
[»] chr2 (1 HSPs)
chr2 (265-332)||(17991410-17991477)
[»] chr1 (4 HSPs)
chr1 (260-339)||(26137839-26137918)
chr1 (271-337)||(266549-266615)
chr1 (260-371)||(28125841-28125952)
chr1 (78-118)||(26137522-26137562)
[»] chr8 (3 HSPs)
chr8 (263-334)||(16353077-16353148)
chr8 (263-316)||(16450893-16450946)
chr8 (276-337)||(31906921-31906982)
[»] chr5 (1 HSPs)
chr5 (280-337)||(16693015-16693072)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Complemental strand, 5089565 - 5089117
Alignment:
Q  14 aatcataggtaaagaaattgttcgaaaagaatcggtcattgagcctgggaagcgtaccagactatggttccatgaagatatagttcgtgttttaaaagaa 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  5089565 aatcatgggtaaagaaattgttcgaaaagaatcggtcattgagcctgggaagcgtaccagactatggttctgtgaagatatagttcgtgttttaaaagaa 5089466  T
Q  114 aatacggtaaatgaattgtttgtttattttgtgtgtacgaaagtcttttaaatgttgtcgtttatttacctcnnnnnnnnngtgttaaaaggggacaggt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||          |||||||||||||||||||    
T  5089465 aatacggtaaatgaattgtttgtttattttgtgtgtacgaaagtcttttaaatgttgt--tttatttacct---tttttttgtgttaaaaggggacaggt 5089371  T
Q  214 aatattgaaatcatacatcttgacttctcctcgattaaagaagttgtagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatca 313  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  5089370 aatactgaaatcatacatcttgacttctcctcgattaaagaagttgtagattggaatggaaaggccttcaagaaaatgaaaattctcaaaacacttgtca 5089271  T
Q  314 ttaaaagtggtcatttttccaaagctcctgtatattttccaagtactttgagagtattagaatggcgaagatatccttcacaatgtttgccatcaagcat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5089270 ttaaaagtggtcatttttccaaagctcctgtatattttccaagtactttgagagtattagaatggcaaagatatccttcacaatgtttgccatcaagcat 5089171  T
Q  414 tttcaacaaggcaagtaaaataagtttattttctgattatgtatgtttataaat 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5089170 tttcaacaaggcaagtaaaataagtttattttctgattatgtatgtttataaat 5089117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 18653812 - 18653753
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaa 319  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  18653812 tagactggaatggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaa 18653753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 18722408 - 18722349
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaa 319  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  18722408 tagactggaatggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaa 18722349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 18687948 - 18687889
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaa 319  Q
    |||| |||||||||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  18687948 tagactggaatggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaa 18687889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 18697736 - 18697685
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttat 311  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  18697736 tagactggaatggaaaggccttcaagaagatgacaaatctcaaaacacttat 18697685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 18729830 - 18729771
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaa 319  Q
    |||| |||||||||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  18729830 tagactggaatggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaa 18729771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 18677894 - 18677843
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttat 311  Q
    |||| |||||||||||| |||||||||| |||| ||||||||||||||||||    
T  18677894 tagactggaatggaaagaccttcaagaagatgacaaatctcaaaacacttat 18677843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 261 - 435
Target Start/End: Original strand, 26938949 - 26939123
Alignment:
Q  261 agattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaa-gctcctgtatattttccaagtac 359  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||     
T  26938949 agattggaatggtaaggccttcaagaagatgaaaaatcttaaaacacttatcattaaaagtggtcatttttccaaaggctccag-gtattttccaagtag 26939047  T
Q  360 tttgagagtattagaatggcgaagatatccttcacaatgtttgccatcaagcattttcaacaaggcaagtaaaata 435  Q
    ||| |||||||| ||||||| ||||||||||||  | ||| | ||||  ||| |||| |||||||||||| |||||    
T  26939048 tttaagagtattggaatggcaaagatatccttccgagtgtataccatttagccttttgaacaaggcaagtgaaata 26939123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 26637476 - 26637586
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| ||||||||| ||||||| ||||| |||| || ||||||||||||| |||| ||||||||||| |||||||||  |||| | ||| ||||||||||    
T  26637476 tagagtggaatggagaggcctttaagaagatgacaa-tctcaaaacacttgtcataaaaagtggtcaattttccaaaagtcctatgtatattccaagtac 26637574  T
Q  360 tttgagagtatt 371  Q
    ||||||||||||    
T  26637575 tttgagagtatt 26637586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 26743442 - 26743552
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| ||||||||| ||||||| ||||| |||| || ||||||||||||| |||| ||||||||||| |||||||||  |||| | ||| ||||||||||    
T  26743442 tagagtggaatggagaggcctttaagaagatgacaa-tctcaaaacacttgtcataaaaagtggtcaattttccaaaagtcctatgtatattccaagtac 26743540  T
Q  360 tttgagagtatt 371  Q
    ||||||||||||    
T  26743541 tttgagagtatt 26743552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 467
Target Start/End: Original strand, 26825727 - 26825934
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||||||| |||||||  || |||||||| |||| ||| |  ||  | |||||||     
T  26825727 tagattggaatggaaaggctttcatgaagatgacaaatctcaaaacacttattattaaaaagggccatttttctaaaggtccagagtacctcccaagtag 26825826  T
Q  360 tttgagagtattagaatggcgaagatatccttcacaatgtttgccatcaagcattttcaacaaggcaagtaaaataagtttattttctgattatgtatgt 459  Q
    ||||||||||||  |||||   || ||||||||  | | | |  |||| || ||||| |||||||||||| ||||||||| ||||||  ||| ||||| |    
T  26825827 tttgagagtattgaaatgggataggtatccttcggattctctatcatctagtattttgaacaaggcaagtgaaataagttcattttccaattgtgtatat 26825926  T
Q  460 ttataaat 467  Q
    ||||||||    
T  26825927 ttataaat 26825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 26648355 - 26648455
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtactttgagagtat 370  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||| ||| |||||||||||| |||| || |  |||| ||||||| | |||||||||||    
T  26648355 ggaaaggccttcaagaagatgacaaaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtat 26648454  T
Q  371 t 371  Q
    |    
T  26648455 t 26648455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 26754323 - 26754423
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtactttgagagtat 370  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||| ||| |||||||||||| |||| || |  |||| ||||||| | |||||||||||    
T  26754323 ggaaaggccttcaagaagatgacaaaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtat 26754422  T
Q  371 t 371  Q
    |    
T  26754423 t 26754423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 260 - 392
Target Start/End: Original strand, 26863505 - 26863637
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||| ||| |||||||| |||| |||   |||  || |||||      
T  26863505 tagactggaatggaaaggccttcaagaagatgaaaaaactcaaaacacttgtcattgaaaatggccatttttctaaaggtcccaaatacctttcaagttg 26863604  T
Q  360 tttgagagtattagaatggcgaagatatccttc 392  Q
    ||||||||||||| |||||  | ||||||||||    
T  26863605 tttgagagtattaaaatggaaaggatatccttc 26863637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 26813405 - 26813516
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||| ||||| |||| |||     || |||| |||||    
T  26813405 tagattggaatggaaaggccttcaagaagatgacaaaactcaaaacacttattattgaaaatggtcaattttctaaaggtcccaagcatcttcctagtac 26813504  T
Q  360 tttgagagtatt 371  Q
    ||||||||||||    
T  26813505 tttgagagtatt 26813516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 27602976 - 27602870
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| ||||||||||||||| | ||||| |||| |||||||||||||||||||||| ||| |||||| ||||| | || |||||  ||| |||||||||     
T  27602976 tagagtggaatggaaaggccatgaagaagatgacaaatctcaaaacacttatcattgaaaatggtcagttttctagaggtcctgactatcttccaagtag 27602877  T
Q  360 tttgaga 366  Q
    |||||||    
T  27602876 tttgaga 27602870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 27216371 - 27216472
Alignment:
Q  265 tggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtactttga 364  Q
    |||| |||||||||||||| ||| |||||||||||||||||| |||||||| ||| ||| |||||||| |||| |||    ||| ||||||||| |||||    
T  27216371 tggagtggaaaggccttcacgaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttctaaaggtcccaattatcttccaagtagtttga 27216470  T
Q  365 ga 366  Q
    ||    
T  27216471 ga 27216472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 26885989 - 26886092
Alignment:
Q  268 aatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtactttgagag 367  Q
    ||||||||| |||||||||| |||| ||| |||||||| ||||||||| ||| ||| ||||||||||||| |||    ||| |||||| || ||||||||    
T  26885989 aatggaaagtccttcaagaagatgacaaaactcaaaactcttatcattgaaaatggccatttttccaaaggtccgaagtatcttccaaatagtttgagag 26886088  T
Q  368 tatt 371  Q
    ||||    
T  26886089 tatt 26886092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 26657883 - 26657989
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| |||||||||||| |||||| ||| |||| |||||||||||| ||||||||| ||| ||| | |||||| |||| |||   | || |||||||||     
T  26657883 tagactggaatggaaagcccttcaggaagatgacaaatctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtag 26657982  T
Q  360 tttgaga 366  Q
    |||||||    
T  26657983 tttgaga 26657989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 26763854 - 26763960
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| |||||||||||| |||||| ||| |||| |||||||||||| ||||||||| ||| ||| | |||||| |||| |||   | || |||||||||     
T  26763854 tagactggaatggaaagcccttcaggaagatgacaaatctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtag 26763953  T
Q  360 tttgaga 366  Q
    |||||||    
T  26763954 tttgaga 26763960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 26850576 - 26850621
Alignment:
Q  267 gaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatc 312  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  26850576 gaatgaaaaggccttcaagaagatgacaaatctcaaaacacttatc 26850621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 27609380 - 27609319
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttc 332  Q
    ||||||||||||||||| |||| ||| || ||||||||||||||| ||| ||| ||||||||    
T  27609380 ggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccatttttc 27609319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 27696849 - 27696788
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttc 332  Q
    ||||||||||||||||| |||| ||| ||||||||| |||||||| ||| ||| ||||||||    
T  27696849 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcattgaaaatggccatttttc 27696788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 26960990 - 26961038
Alignment:
Q  267 gaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatt 315  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||||||||    
T  26960990 gaatgaaaaggcattcaagaagatgacaaatctcaaaacacttatcatt 26961038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 26979307 - 26979355
Alignment:
Q  267 gaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatt 315  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||||||||    
T  26979307 gaatgaaaaggcattcaagaagatgacaaatctcaaaacacttatcatt 26979355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 27663464 - 27663417
Alignment:
Q  268 aatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatt 315  Q
    |||| ||||||||| ||||| |||||||| ||||||||||||||||||    
T  27663464 aatgaaaaggcctttaagaagatgaaaaaactcaaaacacttatcatt 27663417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 25075787 - 25075833
Alignment:
Q  268 aatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcat 314  Q
    |||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  25075787 aatggagaggccttcaagaagatgacaaatatcaaaacacttatcat 25075833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 27716759 - 27716693
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaag 337  Q
    ||||||||||||||||| |||| ||| || ||||||||||||||| ||| ||| |||| ||| ||||    
T  27716759 ggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccattgttctaaag 27716693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 27680884 - 27680945
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttc 332  Q
    ||||||||||||||||| |||| ||| || ||||||||||||||| ||| ||| | ||||||    
T  27680884 ggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccttttttc 27680945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 29523508 - 29523577
Alignment:
Q  54 gagcctgggaagcgtaccagactatggttccatgaagatatagttcgtgttttaaaagaaaatacggtaa 123  Q
    |||||||||||  |||  ||||||||||| | |||||||||| ||| ||| ||||| |||||||||||||    
T  29523508 gagcctgggaaatgtagtagactatggttgcctgaagatataattcatgtcttaaaggaaaatacggtaa 29523577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 26625146 - 26625190
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatt 315  Q
    ||||||||||||| ||| |||| ||| ||||||||||||||||||    
T  26625146 ggaaaggccttcaggaagatgacaaaactcaaaacacttatcatt 26625190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 26731123 - 26731167
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatt 315  Q
    ||||||||||||| ||| |||| ||| ||||||||||||||||||    
T  26731123 ggaaaggccttcaggaagatgacaaaactcaaaacacttatcatt 26731167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 31286475 - 31286539
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaa 335  Q
    |||| |||||||||||| |||| ||| || |||||||| |||||| ||| ||| |||||||||||    
T  31286475 ggaatggccttcaagaagatgacaaaacttaaaacactaatcattgaaaatggccatttttccaa 31286539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 17991477 - 17991410
Alignment:
Q  265 tggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttc 332  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  ||||||||    
T  17991477 tggaatggaaaggccttcaagaagatgaaaaaactcaaaacacttatcattgaaaatgaccatttttc 17991410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 26137839 - 26137918
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagct 339  Q
    ||||||||||||||||||| ||  | |||||||||  ||||||| ||||||||||| ||| |||||||||||| ||||||    
T  26137839 tagattggaatggaaaggcatttcaaaaaatgaaaggtctcaaagcacttatcattgaaaatggtcatttttctaaagct 26137918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 266615 - 266549
Alignment:
Q  271 ggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaag 337  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||| ||| ||| |||||||| ||||    
T  266615 ggaaaggccttcaagaagatgacaaatctcaaaacacttgtcattgaaaatgggcatttttctaaag 266549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 28125952 - 28125841
Alignment:
Q  260 tagattggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaagctcctgtatattttccaagtac 359  Q
    |||| |||||| |||| ||||||||||| |||  |||||| ||||||||||| || |||| |||||| || ||||||  |||    ||| ||||||||||    
T  28125952 tagactggaatcgaaaagccttcaagaagatgtcaaatcttaaaacacttattataaaaaatggtcaattctccaaaagtcccaagtatcttccaagtac 28125853  T
Q  360 tttgagagtatt 371  Q
    ||||||||||||    
T  28125852 tttgagagtatt 28125841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 26137522 - 26137562
Alignment:
Q  78 tggttccatgaagatatagttcgtgttttaaaagaaaatac 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  26137522 tggtttcatgaagatatagttcatgttttaaaagaaaatac 26137562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 16353148 - 16353077
Alignment:
Q  263 attggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttcca 334  Q
    ||||| ||||| ||||||||||||| ||| | || |||||||||||||| |||  || ||||||||||||||    
T  16353148 attgggatggagaggccttcaagaagatggacaaactcaaaacacttattattcgaaatggtcatttttcca 16353077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 16450893 - 16450946
Alignment:
Q  263 attggaatggaaaggccttcaagaaaatgaaaaatctcaaaacacttatcatta 316  Q
    ||||| ||||| ||||||||||| | |||||||| |||||||||||||| ||||    
T  16450893 attgggatggagaggccttcaaggatatgaaaaacctcaaaacacttattatta 16450946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 31906921 - 31906982
Alignment:
Q  276 ggccttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaag 337  Q
    |||||||||||| |||||||| || ||||||||||| || ||| |||| ||||| |||||||    
T  31906921 ggccttcaagaatatgaaaaacctaaaaacacttattatcaaaggtggccatttctccaaag 31906982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 16693015 - 16693072
Alignment:
Q  280 ttcaagaaaatgaaaaatctcaaaacacttatcattaaaagtggtcatttttccaaag 337  Q
    |||||||| |||| ||| |||||||||||||| ||||| | |||||| ||||||||||    
T  16693015 ttcaagaagatgataaacctcaaaacacttattattaagaatggtcacttttccaaag 16693072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University