View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_low_9 (Length: 469)
Name: NF20787_low_9
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 40521162 - 40520724
Alignment:
| Q |
18 |
gaatttttgccattgaatgaattatcagcctttgaatggtagatgaaaggtttgacttgttgaaagcaagttattcaacatttacatatttattgaatgg |
117 |
Q |
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| T |
40521162 |
gaatttttgccattgaatgaattatcagcctttgaatggtagatgaaaggtttgacttgttgaaagcaagttattcaacatttacatatttattgaatgg |
40521063 |
T |
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| Q |
118 |
tagaactgaagaagcagccgttgtaacttgtaagtaggtaatggatccaccacctcctcctcctttgagcacaccgttgctaggtccagctccccctatc |
217 |
Q |
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| T |
40521062 |
tagaactgaagaagcagccgttgtaacttgtaagtaggtaatggatccaccacctcctcctcctttgagcacaccgttgctaggtccagctccccctatc |
40520963 |
T |
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| Q |
218 |
agcggattcttggattcttggtaagtcacttctttttgctcgggttttgcaaccgtatatttttccataaccatgttttcctgttaaactaagcaatatg |
317 |
Q |
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| T |
40520962 |
agcggattcttggattcttggtaagtcacttctttttgctcgagttttgcaaccgtatatttttccataaccatgttttcctgttaaactaagcaatatg |
40520863 |
T |
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| Q |
318 |
agaaagaaaggnnnnnnngatgaaataattgaccatgtatttgttctcttgattttatgtcttccagcttatggtttctatgctgctgtggtttattcag |
417 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520862 |
agaaagaaa-----aaaatatgaaataattgaccatgtatttgttctcttgattttatgtcttccagcttatggtttctatgctgctgtggtttattcag |
40520768 |
T |
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| Q |
418 |
ttgctgctttcctcccctctacgaaccaggacctcctcctctct |
461 |
Q |
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| T |
40520767 |
ttgctgctttcctcccctctacgaaccaggacctcctcctctct |
40520724 |
T |
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