View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20788_high_1 (Length: 379)
Name: NF20788_high_1
Description: NF20788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20788_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 25 - 370
Target Start/End: Complemental strand, 11397621 - 11397265
Alignment:
| Q |
25 |
catcataggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaa |
124 |
Q |
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| T |
11397621 |
catcataggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaa |
11397522 |
T |
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| Q |
125 |
ttaatgcaagaactaaattttttccaaagatcc-----------aatattaagtacttatgttgattgttatagatacaacttgcataaactatttttag |
213 |
Q |
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| T |
11397521 |
ttaatgcaagaactaaattttttccaaagatcctgttactacctaatattaagtacttatgttgattgttatagatacaacttgcataaactattttcac |
11397422 |
T |
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| Q |
214 |
aatgttggtcacttactctccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctca |
313 |
Q |
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| T |
11397421 |
aatgttggtcacttactctccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctca |
11397322 |
T |
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| Q |
314 |
atgaggtttccattatgccaattctgttttcgagtccttcacttaactgatctgtgg |
370 |
Q |
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| T |
11397321 |
atgaggtttccattatgccaattctgttttcgagtccttcacttaactgatctgtgg |
11397265 |
T |
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