View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20788_high_13 (Length: 302)
Name: NF20788_high_13
Description: NF20788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20788_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 40943223 - 40942958
Alignment:
| Q |
30 |
aaatggtcagtgtttcgccaccaagatggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagc |
129 |
Q |
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| T |
40943223 |
aaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatccaagtgactgcctttcattgcttcagc |
40943124 |
T |
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| Q |
130 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcgtgaatcaaacagaatgattcattggcactgttttttgtgata |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40943123 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
40943024 |
T |
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| Q |
230 |
gctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttctgtggtg |
295 |
Q |
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| T |
40943023 |
gctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttgtgtggtg |
40942958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 40956542 - 40956323
Alignment:
| Q |
30 |
aaatggtcagtgtttcgccaccaagatggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagc |
129 |
Q |
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| T |
40956542 |
aaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatctatgtgactgcctttcattgcttcagc |
40956443 |
T |
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| Q |
130 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcgtgaatcaaacagaatgattcattggcactgttttttgtgata |
229 |
Q |
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| T |
40956442 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
40956343 |
T |
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| Q |
230 |
gctgctgatattgtttccat |
249 |
Q |
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|||||||||||||||||||| |
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| T |
40956342 |
gctgctgatattgtttccat |
40956323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 113 - 295
Target Start/End: Complemental strand, 40970235 - 40970053
Alignment:
| Q |
113 |
cctttcattgcctcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcgtgaatcaaacagaatgattcattgg |
212 |
Q |
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| T |
40970235 |
cctttcattgcttcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattgg |
40970136 |
T |
|
| Q |
213 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttctgtggtg |
295 |
Q |
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| T |
40970135 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttgtgtggtg |
40970053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 42615167 - 42615255
Alignment:
| Q |
62 |
accggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagctgccacaccccaattcaaagg |
150 |
Q |
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| T |
42615167 |
accggtttccggtattcctctaccatacgcttcacctcatctaggtgactacccttcatagaatctgcagctataccccaattcaaagg |
42615255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 28187617 - 28187645
Alignment:
| Q |
74 |
tactcctccaccatacgcttcacctcatc |
102 |
Q |
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| T |
28187617 |
tactcctccaccatacgcttcacctcatc |
28187645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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