View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20788_high_4 (Length: 352)
Name: NF20788_high_4
Description: NF20788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20788_high_4 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: scaffold0168 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 18087 - 18400
Alignment:
| Q |
10 |
gcatagggtgggaaaagtaatagtctttaaataaaccggtgaaacccttgggtattccgtccagtatgtataaaattcaccttacttgtgttatctttgt |
109 |
Q |
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| T |
18087 |
gcataaggtgtgaaaagtaatagtatttagataaaccggtgaaacccttgggtattccgtctagtatgtataaaattcaccttacctgtgttatctttgt |
18186 |
T |
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| Q |
110 |
caggctttgagaattatctccttgattttgcttagctatcaagtttggtaattgaaattctttcaactgcaatatacannnnnnnnaatgacaaatgtta |
209 |
Q |
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| T |
18187 |
caggctttgagaattatctccttgattttgcttagctatcaagtttggtaattgaaattctttcaactgcaatatacattttttttaatgacaaatgtta |
18286 |
T |
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| Q |
210 |
atatgttagtannnnnnnncattgcctagacttgaaacatgtatctttaattcttcaactcctttgattctttagaccaaactggttgagttattcaacc |
309 |
Q |
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| T |
18287 |
atatgttagtattttttttcattgcctagacttgaaacatgtatctttaattcttcaactcctttgattctttagatcaaactggttgagttattcaacc |
18386 |
T |
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| Q |
310 |
ctatatgtaataca |
323 |
Q |
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|||||||||||||| |
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| T |
18387 |
ctatatgtaataca |
18400 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 16512623 - 16512595
Alignment:
| Q |
8 |
aagcatagggtgggaaaagtaatagtctt |
36 |
Q |
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| T |
16512623 |
aagcatagggtgggaaaagtaatagtctt |
16512595 |
T |
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