View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20788_high_7 (Length: 345)

Name: NF20788_high_7
Description: NF20788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20788_high_7
NF20788_high_7
[»] chr1 (11 HSPs)
chr1 (30-337)||(51762888-51763189)
chr1 (39-331)||(51858404-51858692)
chr1 (39-331)||(51854744-51855033)
chr1 (51-261)||(51756727-51756933)
chr1 (58-121)||(51782803-51782866)
chr1 (61-119)||(51407546-51407604)
chr1 (73-121)||(51832377-51832425)
chr1 (63-131)||(51381444-51381512)
chr1 (298-330)||(51829572-51829604)
chr1 (294-331)||(51221417-51221454)
chr1 (298-330)||(51832169-51832201)
[»] chr6 (4 HSPs)
chr6 (51-267)||(4182978-4183190)
chr6 (51-267)||(4743822-4744034)
chr6 (73-113)||(19119075-19119115)
chr6 (73-113)||(19126369-19126409)
[»] chr3 (6 HSPs)
chr3 (298-331)||(747352-747385)
chr3 (298-330)||(9608570-9608602)
chr3 (73-113)||(23197024-23197064)
chr3 (299-330)||(7334484-7334515)
chr3 (63-121)||(2492086-2492144)
chr3 (63-121)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (73-122)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 51762888 - 51763189
Alignment:
Q  30 ggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaa 129  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762888 ggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaa 51762987  T
Q  130 aagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagc 229  Q
    |||||| |||||||||       ||| ||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  51762988 aagctgtcactattagaaaaaaatgcacaaacaatccctcaacaccc------taattatgccatttccaggttggtaatcataatgagggtgagaaagc 51763081  T
Q  230 tcttgatacaactcattctccaaagcaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattc 329  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763082 tcttgatacaactcattctccaaaccaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattc 51763181  T
Q  330 cctttgct 337  Q
    ||||||||    
T  51763182 cctttgct 51763189  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 51858692 - 51858404
Alignment:
Q  39 ataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggca 138  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||  || ||    
T  51858692 ataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatcagaaaacttgtca 51858593  T
Q  139 ctattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatac 238  Q
    |||| ||       ||| ||| |||||||||| ||||||||||| |||   || | ||||||||| ||||| |||| |||||||| ||||||||||| ||    
T  51858592 ctatgagaaaaaa-tgcacaagcaatccctcagcacccccaaggcaat---gcaagttccaggtttgtaattataaagagggtgaaaaagctcttgacac 51858497  T
Q  239 aactcattctccaaagcaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattccc 331  Q
    ||||||||||||||| ||||||||||||| |||| |  ||||| | |||||  | ||| ||||||||||||||||||||||| | ||||||||    
T  51858496 aactcattctccaaatcaagagaaacaatgaccctcgcaaaactacgatcatgatataccaaccaattaacagtgtcactcaaagatattccc 51858404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 51855033 - 51854744
Alignment:
Q  39 ataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggca 138  Q
    |||| |||||||  |||| ||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||| || ||||||  |  ||    
T  51855033 ataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctca 51854934  T
Q  139 ctattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatac 238  Q
    ||| |||       ||| ||||||||||||||||||||||||||||||   || |||| |||||| ||| |||||| |||||||||||| ||||||||||    
T  51854933 ctactagaaaaag-tgcacaaacaatccctcaacacccccaaggtaat---gcgatttgcaggttcgtagtcataaagagggtgagaaaactcttgatac 51854838  T
Q  239 aactcattctccaaagcaagagaaacaataacccac-caaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattccc 331  Q
    ||| ||||||||||| ||||||||||||| |||| | ||||||| | |||||  | ||| |||||||||||| ||||| | |||||||||||||    
T  51854837 aacccattctccaaatcaagagaaacaatgaccctctcaaaaactaggatcatcatataccaaccaattaaccgtgtcgcacacaaatattccc 51854744  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 261
Target Start/End: Original strand, 51756727 - 51756933
Alignment:
Q  51 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 150  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||| | ||         
T  51756727 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactttgag-aaaa 51756825  T
Q  151 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 250  Q
      ||| |||||||||||||||||||||||||   || |||  |||| |  |||||| |||| || |||||||  ||||||||||| ||||||| ||||||    
T  51756826 aatgcacaaacaatccctcaacacccccaag---ataatgtaattttcttgttggttatcacaaagagggtgcaaaagctcttgagacaactccttctcc 51756922  T
Q  251 aaagcaagaga 261  Q
    ||| |||||||    
T  51756923 aaatcaagaga 51756933  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 51782866 - 51782803
Alignment:
Q  58 atttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 121  Q
    |||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  51782866 attttaggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaa 51782803  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  61 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 119  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 51832425 - 51832377
Alignment:
Q  73 aacaatttagtccaagattgtccatttccatattccttcatgatccaaa 121  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 51381444 - 51381512
Alignment:
Q  63 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaa 131  Q
    ||||| ||| ||||||||||||||||| | | ||||||||||||| ||||| ||||||| || ||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaa 51381512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 51829604 - 51829572
Alignment:
Q  298 caaccaattaacagtgtcactcacaaatattcc 330  Q
    |||||||||||||||||||||||||||||||||    
T  51829604 caaccaattaacagtgtcactcacaaatattcc 51829572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 51221417 - 51221454
Alignment:
Q  294 ataacaaccaattaacagtgtcactcacaaatattccc 331  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  51221417 ataacaaccagttaaccgtgtcactcacaaatattccc 51221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 51832201 - 51832169
Alignment:
Q  298 caaccaattaacagtgtcactcacaaatattcc 330  Q
    |||||||||||||||||||||||||||| ||||    
T  51832201 caaccaattaacagtgtcactcacaaatgttcc 51832169  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 267
Target Start/End: Original strand, 4182978 - 4183190
Alignment:
Q  51 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 150  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||||||||         
T  4182978 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaa 4183076  T
Q  151 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 250  Q
      ||| ||||||||||||||||| ||||||||||    || || || ||| ||||  ||||||| ||||||||||||||||||||||  |||| |||| |    
T  4183077 aatgcacaaacaatccctcaacatccccaaggta---ttgtcagtttcagattggatatcataaagagggtgagaaagctcttgataagactccttctgc 4183173  T
Q  251 aaagcaagagaaacaat 267  Q
    |||  ||||||||||||    
T  4183174 aaatgaagagaaacaat 4183190  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 267
Target Start/End: Original strand, 4743822 - 4744034
Alignment:
Q  51 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 150  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||||||||         
T  4743822 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaa 4743920  T
Q  151 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 250  Q
      ||| ||||||||||||||||||||||||||||    ||  | || ||| ||||  ||||||| |||||||||||| |||||||||  |||| |||| |    
T  4743921 aatgcacaaacaatccctcaacacccccaaggta---ttgtaagtttcagattggatatcataaagagggtgagaaaactcttgataagactccttctgc 4744017  T
Q  251 aaagcaagagaaacaat 267  Q
    |||  ||||||||||||    
T  4744018 aaatgaagagaaacaat 4744034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  73 aacaatttagtccaagattgtccatttccatattccttcat 113  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  73 aacaatttagtccaagattgtccatttccatattccttcat 113  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 747352 - 747385
Alignment:
Q  298 caaccaattaacagtgtcactcacaaatattccc 331  Q
    ||||||||||||||||||||||||||||||||||    
T  747352 caaccaattaacagtgtcactcacaaatattccc 747385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 9608570 - 9608602
Alignment:
Q  298 caaccaattaacagtgtcactcacaaatattcc 330  Q
    |||||||||||||||||||||||||||||||||    
T  9608570 caaccaattaacagtgtcactcacaaatattcc 9608602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 23197064 - 23197024
Alignment:
Q  73 aacaatttagtccaagattgtccatttccatattccttcat 113  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcat 23197024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 7334484 - 7334515
Alignment:
Q  299 aaccaattaacagtgtcactcacaaatattcc 330  Q
    ||||||||||||||||||||||||||||||||    
T  7334484 aaccaattaacagtgtcactcacaaatattcc 7334515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 2492144 - 2492086
Alignment:
Q  63 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 121  Q
    |||||||||  |||||||||||||||| | || ||||||||| |||||||| |||||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 2631419 - 2631361
Alignment:
Q  63 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 121  Q
    |||||||||  |||||||||||||||| | |  |||||||||||||||||| |||||||    
T  2631419 aggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 20016184 - 20016233
Alignment:
Q  73 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaa 122  Q
    ||||||||||||||||| | |  | |||||||||||||||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaaa 20016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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