View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20789_high_1 (Length: 472)
Name: NF20789_high_1
Description: NF20789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20789_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 7654531 - 7654775
Alignment:
| Q |
10 |
aaaagaaatataatcaagaaacacataaataagaatctgatcttctcttttgatctgtttctataggttctgattcttgagataattaataataataatg |
109 |
Q |
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| T |
7654531 |
aaaagaaatataatcaagaaacacataaataagaatctgatcttctctttttatctgtttctataagtttcgattcttgaactaattaataataataatg |
7654630 |
T |
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| Q |
110 |
gcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttatttttgttt |
209 |
Q |
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| T |
7654631 |
gcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcatttgctgaatttttctccatgcttatttttgttt |
7654730 |
T |
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| Q |
210 |
ttgctggtcaaggatctggcatggcttacagtgagagctctacat |
254 |
Q |
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| T |
7654731 |
ttgctggtcaaggatctggcatggcttacagtgagagctctacat |
7654775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 252 - 452
Target Start/End: Original strand, 7654820 - 7655020
Alignment:
| Q |
252 |
cattctatttacgtttttaataaaagattgactcgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
351 |
Q |
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| T |
7654820 |
cattctatttacgtttttaataaaagattgacttgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
7654919 |
T |
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| Q |
352 |
tgttcgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgtctgtgttactgcttcataaatggaca |
451 |
Q |
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| T |
7654920 |
tgtttgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgtctgtgttactgcttcataaatggaca |
7655019 |
T |
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| Q |
452 |
t |
452 |
Q |
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| T |
7655020 |
t |
7655020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 52103645 - 52103506
Alignment:
| Q |
105 |
taatggcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttatttt |
204 |
Q |
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||||||||||| | ||||| |||||||| |||||| |||||||| | | |||| |||||||||||| || || || || || ||||| ||||| ||||| |
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| T |
52103645 |
taatggcaatctacagaatagcaattgggtctcctagagaggctagcaatcctgctgcaattagagcagcctttgcagagttcttctctatgctcatttt |
52103546 |
T |
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| Q |
205 |
tgtttttgctggtcaaggatctggcatggcttacagtgag |
244 |
Q |
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| T |
52103545 |
tgtttttgctggccaaggctctggcatggcctatagtgag |
52103506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 40494259 - 40494319
Alignment:
| Q |
368 |
atgtgtttatattgaatcactttcatt--ctcaaattattaccggtgtctatgtcattgtc |
426 |
Q |
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| T |
40494259 |
atgtgattaaattcaatcactttcatttgcttaaattattaccggtgtctatgtcactgtc |
40494319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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