View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20789_high_2 (Length: 472)
Name: NF20789_high_2
Description: NF20789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20789_high_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 43141710 - 43142188
Alignment:
| Q |
17 |
aggcacaaatgtcgttattgcaggatcatggtacagttgggtcacgtaattaagttactttgttgtttatacatcatcgtcatcatggtatattatctga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43141710 |
aggcacaaatgtcgttattgcaggatcatggtacagttgggtcacgtaa----gttactttgttgtttatacatcatcgtcatcatggtatattatgtga |
43141805 |
T |
|
| Q |
117 |
taataacatgactcttt---------ttgttctcttaaggaggccataaattaaagcatgtaggtcaacattttgacattgtcaaaacacttccaatagg |
207 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43141806 |
taataacttgactctttgtttgccctttgttctcttaaggaggccataaattaaagcatgtgggtcaacattttgacattgtcaaaacacttccaatagg |
43141905 |
T |
|
| Q |
208 |
gttgttggaaatatgctccggag----------------atgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttacnnnnnn |
291 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43141906 |
gttgttggaaatatgctccggagtacccttctgatcttgatgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttactttttt |
43142005 |
T |
|
| Q |
292 |
nncccacattaatattgtgcatacatgatgtagtcaattacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43142006 |
ttcccacattaatattgtgcatacatgatgtaatcaattacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacg |
43142105 |
T |
|
| Q |
392 |
tacagtt--tagctcttttatgtatgcttattcttaaaggatatacaagaaattggaattacatcttggtactatctgtgtgt |
472 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43142106 |
tacagtttatagctcttttatgtatgcttattcttaaaggatatacaagaaattggaattacatcttggtactatctgtgtgt |
43142188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University