View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20789_low_5 (Length: 237)
Name: NF20789_low_5
Description: NF20789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20789_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 55208839 - 55208620
Alignment:
| Q |
18 |
ccaactccatccttttcttcgtcgcttgtgcaatttgttcatccttttgtcttagtatatgaaacacatcatattccaccttcttcaatattgtccttcg |
117 |
Q |
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| T |
55208839 |
ccaactccatccttttcttcgtcgcttgtgcaatttgttcatccttttgtcttagtatatgaaacacatcatattctaccttcttcaatattgtccttcg |
55208740 |
T |
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| Q |
118 |
ctgctcttgcaacaatagtctcaatttctcgttctgtcaccataaaaaacgaccaattaatcatagtaacatataaaacatgatgattacatatgtatat |
217 |
Q |
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| T |
55208739 |
ctgctcttgcaacaatagtctcaatttctcgttctgtcaccataaaaaacgaccaattaattatagtaacatataaaacatgatgattacatatgtatat |
55208640 |
T |
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| Q |
218 |
taaaattgaaaagggaaaac |
237 |
Q |
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| T |
55208639 |
taaaattgaaaagggaaaac |
55208620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 13135303 - 13135212
Alignment:
| Q |
22 |
ctccatccttttcttcgtcgcttgtgcaatttgttcatccttttgtcttagtatatgaaacacatcatattccaccttcttcaatattgtcc |
113 |
Q |
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| T |
13135303 |
ctccaaccttttctttgtcgcttgtgctatttgttcatccttttgtcttagtatatgacacatatccgattctaccttcttcaataatgtcc |
13135212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 13135194 - 13135148
Alignment:
| Q |
119 |
tgctcttgcaacaatagtctcaatttctcgttctgtcaccataaaaa |
165 |
Q |
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| T |
13135194 |
tgctcttgcaccaatattctcaatttctcgctctgtcaccacaaaaa |
13135148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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