View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20789_low_6 (Length: 217)
Name: NF20789_low_6
Description: NF20789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20789_low_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 55208060 - 55208277
Alignment:
| Q |
1 |
taaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgcatgtggtttattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55208060 |
taaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgca-gtggtttattg |
55208158 |
T |
|
| Q |
101 |
tttggtgtttaccgcgttccacacactcctc-ttaaagctcacactacactataaattaggaagaaaatcatatttccatttcag-tactcctatttttc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55208159 |
tttggtgtttaccgcgttccacacactcctctttaaagctcacactacactataaattaggaacaaaatcatatttccatttcagttactcctatttttc |
55208258 |
T |
|
| Q |
199 |
ttcattcaaaatcatgttc |
217 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
55208259 |
ttcattcaaaatcatgttc |
55208277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University