View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_high_1 (Length: 513)
Name: NF2078_high_1
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 216 - 498
Target Start/End: Complemental strand, 7542858 - 7542578
Alignment:
| Q |
216 |
atcttcacatatcatacaattgctatcctttttaattacacatatcttgttagagaagtatgatatgtgaagataatattccttaattatatgcttctct |
315 |
Q |
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| T |
7542858 |
atcttcacatatcatacaattgctatcctttttaattacacatatcttgttagagaagtatgatatgtgaagataatattcc----ttatatgcttctct |
7542763 |
T |
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| Q |
316 |
aacaagagaataacaaaaacaacaacataacaattgctaataaatttgtacac--nnnnnnnnncatgtatgtgttcttacaattgaggaatctctgaca |
413 |
Q |
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| T |
7542762 |
aacaagagaataacaaaaacaacaacataacaattgctaataaatttgtacacaaaaaaaaaaacatgtatgtgttcttacaattgaggaatctctgaca |
7542663 |
T |
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| Q |
414 |
ggacgatgaacggaatgtcctaattgaacttgaagagggataagaggagagccaacaaggtaaagcaaaaatcgaagttcattta |
498 |
Q |
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| T |
7542662 |
ggacgatgaacggaatgtcctaattgaacttgaagagggataagaggagagccaacaaggtaaagcaaaaatcgaagttcattta |
7542578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 7543184 - 7542990
Alignment:
| Q |
10 |
aaaattaacaattcatttcatacggtggacatttgattcttgataaaattcattggagataaactactttcaatcgatgtagttgtcaaaagcaaatcaa |
109 |
Q |
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| T |
7543184 |
aaaattaacaattcatttcatacggtggacatttgattcttgataaaattcattggagataaactactttcaatcgatgtagttgtcaaaagcaaatcaa |
7543085 |
T |
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| Q |
110 |
aactattaattcagacacattaatgcataagtagtacgtaatttctttagatcttcacacaaaatagacatattaaatcctcagcttaatttttt |
204 |
Q |
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| T |
7543084 |
aactattaattcagacacattaatgcataagtagtacgtaatttctttagatcttcacacaaaatagacatattaaatccacagcttaatttttt |
7542990 |
T |
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