View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_high_14 (Length: 239)
Name: NF2078_high_14
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7067474 - 7067250
Alignment:
| Q |
1 |
tgttattgtgttaggacacaattgcaaggtaatcctagtgttcatttctttggtgtttatgatggacatggtgaatttggtggactgtgttctaattttg |
100 |
Q |
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| T |
7067474 |
tgttattgtgttaggacacaattgcaaggtaatcctagtgttcatttctttggtgtttatgatggacatggtgaatttggtggactgtgttctaattttg |
7067375 |
T |
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| Q |
101 |
ttaagaataagttggttgagaaattgtctaatgattctgcattgttagaggatcctgttaaggcttataattcggcttttttggctacgaatgatgagtt |
200 |
Q |
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| T |
7067374 |
ttaagaataagttggttgagaaattgtctaatgattctgcattgttagaggatcctgttaaggcttataattcggcttttttggctacgaatgatgagtt |
7067275 |
T |
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| Q |
201 |
gcataaaagtgagattgatgattgt |
225 |
Q |
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| T |
7067274 |
gcataaaagtgagattgatgattgt |
7067250 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 49024064 - 49024243
Alignment:
| Q |
43 |
catttctttggtgtttatgatggacatggtgaatttggtggactgtgttctaattttgttaagaataagttggttgagaaattgtctaatgattctgcat |
142 |
Q |
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| T |
49024064 |
catttctttggtgtttttgatgggcatggtcaatttggtagtcaatgttcaaactttgttagagataggttggtagagaagttatctaatgaccctggat |
49024163 |
T |
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| Q |
143 |
tgttagaggatcctgttaaggcttataattcggcttttttggctacgaatgatgagttgcataaaagtgagattgatgat |
222 |
Q |
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| T |
49024164 |
tggtggaggatcctgttcgagcttacaattctgcgttctcggcaacaaatcatgaattgcatactagtgacattgatgat |
49024243 |
T |
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