View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_high_15 (Length: 239)
Name: NF2078_high_15
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 8061783 - 8061582
Alignment:
| Q |
18 |
gttaaattattgcaaaatatgtatattgactatataaaattaccaaannnnnnnaaaggttgatcttgttaagagtattacattggatgaaatatgactt |
117 |
Q |
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| T |
8061783 |
gttaaattattgcaaaatatgtatattgactatataaatttaccaaatttttttaaaggttgatcttgttaagagtattacattagatgaaatatgactt |
8061684 |
T |
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| Q |
118 |
aacacgattttataagtgggggtattattcacattattacattagtcattttgtaataatttaattagtcatagctcaaattataagttattcacatcaa |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8061683 |
aatacgattttataagtgggggtattattcacattattacattagtcattttgtaataatttaattaatcatagctcaaattataagttattcacatcaa |
8061584 |
T |
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| Q |
218 |
at |
219 |
Q |
| |
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|| |
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| T |
8061583 |
at |
8061582 |
T |
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