View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_high_4 (Length: 389)
Name: NF2078_high_4
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 10592566 - 10592183
Alignment:
| Q |
7 |
tccaataatatcataaataacaaaa-tctaatctcaaatagcaccaacaaaataatcgtgaaaaatgaaactgattatttaatcatcaattgcaaaattt |
105 |
Q |
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| T |
10592566 |
tccaacaatatcataaataacaaaaatctaatctcaaatagcaccaacaaaataattgtgaaaaatgaaactgattatttaatcatcaattgcaaaattt |
10592467 |
T |
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| Q |
106 |
tatttcaattcttgcaaatgttgtaattacattaccagctgtatttattccactcatgcaaatgtatacaaaatatgatgacagctttgtaaaccacact |
205 |
Q |
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| T |
10592466 |
tatttcaattcttgcaaatgttgtaattacattaccagctgtatttattccactcatgcaaatgtatacaaaatatgatgacagctttgcaaaccacact |
10592367 |
T |
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| Q |
206 |
ttggactatacttttatatattttaaaggtagataagcttgattaaaaagcttatacttaactactattcttgatttaagtaagctttcaataccaagta |
305 |
Q |
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| T |
10592366 |
ttggactatacttttatatattttaaaggtcgataagcttgattaaaaagcttatacttaactactattcttgatttaagtaagttttcaataccaagta |
10592267 |
T |
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| Q |
306 |
agaataataaacaggctatatatacttcaactttcaattttcaaactgtactatagagaagtgaaacaagatattggagtttcc |
389 |
Q |
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| T |
10592266 |
agaataataaacaggctatagatacttcaactttcaattttcaaactgtactatagagaagtgaaacaagatattggagtttcc |
10592183 |
T |
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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 28110005 - 28109934
Alignment:
| Q |
201 |
acactttggactatacttttatatattttaaa-ggtagataagcttgattaaaaagcttatacttaactact |
271 |
Q |
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| T |
28110005 |
acactttggactatacttatttatattttaaaaggtagataagcatgattaaaaagcatatactcaactact |
28109934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 32312146 - 32312188
Alignment:
| Q |
200 |
cacactttggactatacttttatatattttaaaggtagataag |
242 |
Q |
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| T |
32312146 |
cacactttggactatacttgtttatattttcaaggtagataag |
32312188 |
T |
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