View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2078_high_8 (Length: 277)

Name: NF2078_high_8
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2078_high_8
NF2078_high_8
[»] chr1 (18 HSPs)
chr1 (19-267)||(13129278-13129530)
chr1 (122-248)||(13161111-13161237)
chr1 (122-248)||(13178365-13178490)
chr1 (19-111)||(34106293-34106385)
chr1 (19-110)||(52316213-52316304)
chr1 (19-103)||(3526042-3526125)
chr1 (19-108)||(43699515-43699604)
chr1 (19-111)||(27491973-27492065)
chr1 (43-110)||(45602844-45602911)
chr1 (122-267)||(13006788-13006923)
chr1 (122-199)||(13093859-13093936)
chr1 (19-108)||(41114657-41114744)
chr1 (65-113)||(11084773-11084821)
chr1 (73-110)||(9080989-9081026)
chr1 (153-215)||(13070691-13070756)
chr1 (150-201)||(13204063-13204114)
chr1 (217-249)||(13093949-13093981)
chr1 (45-108)||(34987104-34987168)
[»] chr4 (5 HSPs)
chr4 (19-111)||(41310041-41310133)
chr4 (19-110)||(2049173-2049266)
chr4 (19-110)||(12763216-12763309)
chr4 (48-110)||(10457420-10457482)
chr4 (19-92)||(34160855-34160928)
[»] chr3 (4 HSPs)
chr3 (19-113)||(34466618-34466712)
chr3 (31-110)||(51499652-51499733)
chr3 (19-101)||(3847675-3847759)
chr3 (57-110)||(11536429-11536482)
[»] chr2 (2 HSPs)
chr2 (19-108)||(21203420-21203508)
chr2 (57-110)||(21949747-21949800)
[»] chr8 (5 HSPs)
chr8 (19-110)||(40318403-40318494)
chr8 (19-108)||(2611739-2611828)
chr8 (19-110)||(15795851-15795944)
chr8 (41-110)||(40716127-40716198)
chr8 (54-110)||(10150704-10150760)
[»] chr6 (17 HSPs)
chr6 (23-104)||(8859330-8859411)
chr6 (19-108)||(5764362-5764453)
chr6 (19-108)||(5767897-5767988)
chr6 (19-108)||(5771432-5771523)
chr6 (19-108)||(5774967-5775058)
chr6 (19-108)||(5778502-5778593)
chr6 (19-108)||(5782037-5782128)
chr6 (19-108)||(5785572-5785663)
chr6 (19-108)||(5789107-5789198)
chr6 (19-108)||(5792642-5792733)
chr6 (19-108)||(5796177-5796268)
chr6 (19-108)||(5799712-5799803)
chr6 (19-108)||(5803247-5803338)
chr6 (19-108)||(5806782-5806873)
chr6 (19-108)||(5810317-5810408)
chr6 (19-108)||(5813852-5813943)
chr6 (19-108)||(5817387-5817478)
[»] chr7 (4 HSPs)
chr7 (19-110)||(34484010-34484101)
chr7 (19-108)||(37370557-37370646)
chr7 (19-79)||(38836328-38836390)
chr7 (19-97)||(39540537-39540617)
[»] chr5 (1 HSPs)
chr5 (19-108)||(36863586-36863677)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 13129278 - 13129530
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttgacccnnnnn 118  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         
T  13129278 gttgctatagggtagcctttggcttcctttcttacttttgtaaacaggttcaggccttaatcctggtttgcattttattttcattgctttgacccaaaaa 13129377  T
Q  119 nnn-ttgcaaaaacaagtttataaaagataaaatgtatt---attgatgcttggagagctcatctccaataacttcaaaatataacaacagttcaactta 214  Q
        ||||| ||||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13129378 aaaattgcagaaacaagtttataaaagataagatgtattattattgatgcttggagagcttatctccaataacttcaaaatataacaacagttcaactta 13129477  T
Q  215 acttacagcagtttattacattgaaacataatttcaaataaaatagagaataa 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13129478 acttacagcagtttattacattgaaacataatttcaaataaaatagagaataa 13129530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 13161111 - 13161237
Alignment:
Q  122 ttgcaaaaacaagtttataaaagataaaatgtattattgatgcttggagagctcatctccaataacttcaaaatataacaacagttcaacttaacttaca 221  Q
    ||||| ||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||| |    
T  13161111 ttgcagaaaaaagtttataaaagagaagatgtattattgttgcttggagaggtcatctccaattacttcaaaatataacaacagctcaacataacttaaa 13161210  T
Q  222 gcagtttattacattgaaacataattt 248  Q
    ||||||||||||| |||||||||||||    
T  13161211 gcagtttattacaatgaaacataattt 13161237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 13178365 - 13178490
Alignment:
Q  122 ttgcaaaaacaagtttataaaagataaaatgtattattgatgcttggagagctcatctccaataacttcaaaatataacaacagttcaacttaacttaca 221  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  13178365 ttgcagaaacaagtctttaaaagataagatgtattattgatgcttggagaggtcatctccaataacttcaaaatataacaacagctcaacataactta-a 13178463  T
Q  222 gcagtttattacattgaaacataattt 248  Q
     ||||||||||||||||| ||||||||    
T  13178464 acagtttattacattgaagcataattt 13178490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34106385 - 34106293
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttgac 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  34106385 gttgctatagggtagcctttggcttcctttctctcttttgtaaacaggttcaggccttaatcatggtttgcattttattttcattgctttgac 34106293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 52316213 - 52316304
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  52316213 gttgctataggatagcctttggtttcgtttctctcttttgtaaacaggttcatgccttaatcctgatttgcatgttattttcattgctttga 52316304  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 3526042 - 3526125
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcatt 103  Q
    ||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3526042 gttgctataggataaccttgg-cttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcatt 3526125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 43699515 - 43699604
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  43699515 gttgctataggatagcctttggcttccttttcctcttttgtaaacaggttcaggccttaatcctcgtttgcattctattttcattgcttt 43699604  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27491973 - 27492065
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttgac 111  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| || |||| ||||||||| || |||| ||||||||||||||||||||||    
T  27491973 gttgctataggatagcctttggcttcctttctctcttttgtaaatagattcaagccttaatcatggtttgaattttattttcattgctttgac 27492065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 45602911 - 45602844
Alignment:
Q  43 tcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  45602911 tcctttctctcttttgtaaacaggttgaggctttaatcctgatttgcattttattttcattgctttga 45602844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 13006788 - 13006923
Alignment:
Q  122 ttgcaaaaacaagtttataaaagataaaatgtattattgatgcttggagagctcatctccaataacttcaaaatataacaacagttcaacttaacttaca 221  Q
    ||||| |||||||||| ||||| |||  ||||  ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||     |    
T  13006788 ttgcagaaacaagtttttaaaatatatgatgt--tattgttgcttggagaggtcatctccaataacttcaaaatataaaaatagttcaacttaa-----a 13006880  T
Q  222 gcagtttattacattgaaacataatttcaaataaaatagagaataa 267  Q
    ||||||||||||||||| | |||||| |   |||||||||||||||    
T  13006881 gcagtttattacattgacatataattgc---taaaatagagaataa 13006923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 13093859 - 13093936
Alignment:
Q  122 ttgcaaaaacaagtttataaaagataaaatgtattattgatgcttggagagctcatctccaataacttcaaaatataa 199  Q
    ||||| ||||| || | |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13093859 ttgcagaaacatgtctttaaaagataagatgtattattgttgcttggagaggtcatctccaataacttcaaaatataa 13093936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 41114657 - 41114744
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| ||||||| | ||||||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||    
T  41114657 gttgctataggatagcctttggcttccttcc-ctcttttgtaaacaggttcagacctt-atcctggtttgcattctattttgattgcttt 41114744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 11084773 - 11084821
Alignment:
Q  65 ggttcaggccttaatcctgatttgcattttattttcattgctttgaccc 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11084773 ggttcaggccttaatcctggtttgcattttattttcattgctttgaccc 11084821  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 9081026 - 9080989
Alignment:
Q  73 ccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9081026 ccttaatcctgatttgcattttattttcattgttttga 9080989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 13070756 - 13070691
Alignment:
Q  153 tattattgatgcttggagagct---catctccaataacttcaaaatataacaacagttcaacttaa 215  Q
    |||||||| ||||||||||| |   | ||||||||||||||||||||||| | |||||||||||||    
T  13070756 tattattgttgcttggagaggtggtcctctccaataacttcaaaatataaaagcagttcaacttaa 13070691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 13204063 - 13204114
Alignment:
Q  150 atgtattattgatgcttggagagctcatctccaataacttcaaaatataaca 201  Q
    ||||||||||  ||||||||||| |||||||  |||||||||||||||||||    
T  13204063 atgtattattattgcttggagaggtcatctcacataacttcaaaatataaca 13204114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 13093949 - 13093981
Alignment:
Q  217 ttacagcagtttattacattgaaacataatttc 249  Q
    ||| |||||||||||||||||||||||||||||    
T  13093949 ttatagcagtttattacattgaaacataatttc 13093981  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 34987104 - 34987168
Alignment:
Q  45 ctttctctcttttgtaaacaggttcagg-ccttaatcctgatttgcattttattttcattgcttt 108  Q
    |||| ||| |||||||||||||| |||| ||||||||||  |||||| |||||||| ||||||||    
T  34987104 ctttttcttttttgtaaacaggtccagggccttaatcctagtttgcaatttatttttattgcttt 34987168  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 41310041 - 41310133
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttgac 111  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  41310041 gttgctatagggtagcctttggcgtcctttctctcttttgtaaacaggttcaagccttaatcctggtttgcattttattttcattgctttgac 41310133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 2049173 - 2049266
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||| ||||||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  2049173 gttgctataggatagcctttggcttcctttctctcttttgtgcaaataggttcaggccttaatcctgatttgctttatattttcattgctttga 2049266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 12763309 - 12763216
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||| |||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  12763309 gttgctataggatagcttttggcttcctttctctcttttgtgtaaacaggttcaggccttaatcctgatttgctttatattttcattgctttga 12763216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 10457482 - 10457420
Alignment:
Q  48 tctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  10457482 tctctcttgtgtaaacaggttcaggccttaatcctgatttgcattttattctcattgccttga 10457420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 34160928 - 34160855
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcatt 92  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  34160928 gttgctataggatagcttttggcttcctttctctcttttgtaaacatgctcaggccttaataatgatttgcatt 34160855  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 34466712 - 34466618
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttgaccc 113  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  34466712 gttgttataggatagcctttggcttcctttctctcttttgtaaacaggttcatgctttaatcctggtttgcattttattttcattgctttgaccc 34466618  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 51499733 - 51499652
Alignment:
Q  31 tagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||| | |||||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  51499733 tagccttaggcttcctttctttcttttgtgtaaacagattcaggccttaatcctggtttgcattttattttcattgccttga 51499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 3847759 - 3847675
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttc--tctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttca 101  Q
    ||||||||||| ||||||| |||||||||||  ||| ||||||||||||| |||||||||||||||  |||||| ||||||||||    
T  3847759 gttgctataggatagccttagacttcctttccttcttttttgtaaacagggtcaggccttaatcctagtttgcaatttattttca 3847675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 11536429 - 11536482
Alignment:
Q  57 tgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||||||||||||||||||| || |||| | |||||||| ||||||||||    
T  11536429 tgtaaacaggttcaggccttaatcatggtttgtaatttatttttattgctttga 11536482  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 21203420 - 21203508
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21203420 gttgctataggatagcctttgccttcctttc-ctcttttgtaaataggttcaggccttaatcctgatttgcattttattttcattgcttt 21203508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 21949800 - 21949747
Alignment:
Q  57 tgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  21949800 tgtaaacaggttcaggccttaatcctggttttcattttattttgattgctttga 21949747  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 40318494 - 40318403
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||    
T  40318494 gttgctataggatagcctttggcttcctttctctcttttgtaaataggttcaggctttaatcctggtttgaattttattttcattgctttga 40318403  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2611828 - 2611739
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    |||||| |||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  2611828 gttgctttaggatagcctttggcttcctttccctcttttgtaaataggttcaggccttaatcctggtttgcattctattttcattgcttt 2611739  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 15795944 - 15795851
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||||||  ||||||||||||| ||||||||||||||  |||||  ||||| |||||||| || ||||||||||||||||||||||||||    
T  15795944 gttgctataggaaagcctttgacttcatttctctcttttgtgtaaacaaattcagaccttaatcatggtttgcattttattttcattgctttga 15795851  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 40716127 - 40716198
Alignment:
Q  41 cttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    |||||||||||||||||||  ||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  40716127 cttcctttctctcttttgtgtaaataggttcatgccttaatcctggtttgcattttattttcattgctttga 40716198  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 10150704 - 10150760
Alignment:
Q  54 ttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||||||||| |||||||||||  |||||| |||||||||||||||||||    
T  10150704 ttttgtaaacaggttcaagccttaatcctagtttgcaatttattttcattgctttga 10150760  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 8859330 - 8859411
Alignment:
Q  23 ctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattg 104  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  8859330 ctataggatagcctttggcttcctttctctcttttgtaaacagattcaggccttaatcctaatttgcattttattttcattg 8859411  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5764453 - 5764362
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5764453 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5767988 - 5767897
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5767988 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5767897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5771523 - 5771432
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5771523 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5771432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5775058 - 5774967
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5775058 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5774967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5778593 - 5778502
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5778593 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5778502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5782128 - 5782037
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5782128 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5782037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5785663 - 5785572
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5785663 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5789198 - 5789107
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5789198 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5789107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5792733 - 5792642
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5792733 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5796268 - 5796177
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5796268 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5796177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5799803 - 5799712
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5799803 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5803338 - 5803247
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5803338 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5803247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5806873 - 5806782
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5806873 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5806782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5810408 - 5810317
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5810408 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5810317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5813943 - 5813852
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5813943 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5817478 - 5817387
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  5817478 gttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5817387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 34484010 - 34484101
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgctttga 110  Q
    ||||||||||| ||||||| | |||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| |||| |||||    
T  34484010 gttgctataggatagccttaggcttcctttctctcttttgtaaataggttcagaccttaattctggtttgcattttatttttattgttttga 34484101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 37370557 - 37370646
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    |||| |||||| ||| ||||  ||||||||| |||||||||||| ||| |||||  ||||| ||||||||||||||||||||||||||||    
T  37370557 gttgttataggatagtctttagcttcctttcactcttttgtaaataggctcaggtattaatactgatttgcattttattttcattgcttt 37370646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38836328 - 38836390
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttt--tgtaaacaggttcaggccttaat 79  Q
    ||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  38836328 gttgctataggatagcctttggcttcctttctctcttttgtgtaaacaggttcagaccttaat 38836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 39540537 - 39540617
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttatt 97  Q
    ||||||||||| ||||||| | |||||||| | ||||||||  ||| |||||||||||||||||||| |||||| ||||||    
T  39540537 gttgctataggatagccttaggcttcctttatttcttttgtgtaaaaaggttcaggccttaatcctggtttgcaatttatt 39540617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 36863677 - 36863586
Alignment:
Q  19 gttgctatagggtagcctttgacttcctttctctcttttgt--aaacaggttcaggccttaatcctgatttgcattttattttcattgcttt 108  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |  ||||| ||||||||||||||  || |||||||||||||| |||||||||    
T  36863677 gttgctataggatagtctttggcttcctttctctcttttatgcaaacatgttcaggccttaattttggtttgcattttatttccattgcttt 36863586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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