View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_low_10 (Length: 249)
Name: NF2078_low_10
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 7067891 - 7067793
Alignment:
| Q |
151 |
ctctctgatcacaattccaacctcaaaatcttaactttcaccctctactacccttttcctgattttgcttctagggtttgttcatgttctttgaagtac |
249 |
Q |
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| T |
7067891 |
ctctctgatcacaattccaacctcaaaatcttaactttcatcctctactacccttttcctgattttgcttctagggtttgttcatgttctttgaagtac |
7067793 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 7068027 - 7067976
Alignment:
| Q |
16 |
atgtctctaccttttccttctttgtgcatttcctctgcatcctagggttatg |
67 |
Q |
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| T |
7068027 |
atgtctctaccttttccttctttgtgcatttcctctgcatcctagggttatg |
7067976 |
T |
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