View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2078_low_11 (Length: 248)

Name: NF2078_low_11
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2078_low_11
NF2078_low_11
[»] chr1 (8 HSPs)
chr1 (17-248)||(40312824-40313055)
chr1 (21-240)||(45598939-45599157)
chr1 (69-248)||(11085260-11085439)
chr1 (30-248)||(33062724-33062944)
chr1 (21-228)||(17012332-17012540)
chr1 (30-248)||(52436416-52436638)
chr1 (113-177)||(17038652-17038716)
chr1 (30-76)||(8902354-8902400)
[»] chr4 (10 HSPs)
chr4 (21-248)||(23541575-23541801)
chr4 (21-248)||(46738865-46739092)
chr4 (21-246)||(19894416-19894639)
chr4 (21-248)||(24143466-24143692)
chr4 (17-248)||(22555300-22555531)
chr4 (17-217)||(11324776-11324976)
chr4 (21-177)||(25354307-25354462)
chr4 (21-212)||(15687336-15687528)
chr4 (41-202)||(11905446-11905608)
chr4 (135-202)||(31971382-31971450)
[»] chr7 (13 HSPs)
chr7 (21-248)||(48797219-48797446)
chr7 (21-248)||(7620413-7620639)
chr7 (40-246)||(3285904-3286110)
chr7 (21-248)||(11628969-11629197)
chr7 (21-248)||(12560813-12561041)
chr7 (21-248)||(14975765-14975990)
chr7 (21-248)||(15405241-15405466)
chr7 (21-246)||(14985004-14985226)
chr7 (21-246)||(15414615-15414837)
chr7 (21-248)||(30226400-30226627)
chr7 (17-171)||(24049778-24049932)
chr7 (21-220)||(11560131-11560330)
chr7 (30-205)||(4547449-4547626)
[»] chr5 (6 HSPs)
chr5 (17-248)||(20497752-20497983)
chr5 (21-248)||(17920386-17920612)
chr5 (21-248)||(7897515-7897742)
chr5 (21-248)||(26182835-26183061)
chr5 (21-248)||(20286891-20287120)
chr5 (113-202)||(24117976-24118066)
[»] chr8 (8 HSPs)
chr8 (21-248)||(17280220-17280446)
chr8 (21-226)||(8727175-8727379)
chr8 (21-247)||(37155125-37155352)
chr8 (21-248)||(39081296-39081523)
chr8 (21-248)||(17880338-17880566)
chr8 (21-248)||(33465760-33465988)
chr8 (43-248)||(22876365-22876573)
chr8 (38-205)||(23250077-23250246)
[»] chr3 (5 HSPs)
chr3 (30-221)||(9037045-9037236)
chr3 (21-248)||(8749370-8749597)
chr3 (21-248)||(9031022-9031233)
chr3 (21-106)||(11564326-11564411)
chr3 (101-177)||(11561164-11561240)
[»] chr6 (8 HSPs)
chr6 (21-248)||(19216285-19216512)
chr6 (21-248)||(16137181-16137408)
chr6 (30-248)||(9384953-9385173)
chr6 (21-247)||(32452318-32452545)
chr6 (33-220)||(15002789-15002978)
chr6 (21-127)||(12444443-12444549)
chr6 (21-143)||(20003433-20003556)
chr6 (33-167)||(15003975-15004111)
[»] chr2 (4 HSPs)
chr2 (21-247)||(18766009-18766236)
chr2 (66-248)||(18606197-18606379)
chr2 (30-247)||(13314566-13314785)
chr2 (21-248)||(29566343-29566571)
[»] scaffold0022 (1 HSPs)
scaffold0022 (16-177)||(3447-3607)
[»] scaffold0328 (1 HSPs)
scaffold0328 (21-248)||(16571-16799)
[»] scaffold0143 (1 HSPs)
scaffold0143 (21-248)||(36628-36856)
[»] scaffold0645 (1 HSPs)
scaffold0645 (101-177)||(1455-1531)
[»] scaffold0032 (1 HSPs)
scaffold0032 (30-171)||(103445-103588)
[»] scaffold0480 (1 HSPs)
scaffold0480 (30-205)||(11531-11708)
[»] scaffold0064 (1 HSPs)
scaffold0064 (135-205)||(52564-52635)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 40313055 - 40312824
Alignment:
Q  17 aaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatg 116  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  40313055 aaaatacaactcaaaacacagtcctaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaaatcatagatgatctattcttcaaatg 40312956  T
Q  117 acggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatt 216  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  40312955 acggcttgaatacttctctaggtcttccagtcttgtttaaatactgaagcaatacgggtcataaatcttgttgggctttagaacaatcctgtgatccatt 40312856  T
Q  217 tcacgtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||||||| |||||||||||||||||||    
T  40312855 tcacgtacaacagaaccagaaaagaaaactcc 40312824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 45599157 - 45598939
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45599157 tacaactcaaa-cacagtcctaaacatgcatcaaaatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacag 45599059  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45599058 cttgaatacttctctaggtcttccagtcttgtttaaatactaaagcaatacgtgtcattaatcttgttgggcttcagaacaattcggtgatccatttcac 45598959  T
Q  221 gtacaacaaaaccagaaaag 240  Q
    |||||||| || ||||||||    
T  45598958 gtacaacagaatcagaaaag 45598939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 11085439 - 11085260
Alignment:
Q  69 ggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaa 168  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||| |||||||    
T  11085439 ggctcacataaacagactcaaaatcctagatgatctattcttcaaatgacggcttgaatatttctctaggtcttccagacttgtttaaatactgaagcaa 11085340  T
Q  169 tacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||    
T  11085339 tacgggtcattaatcttgttgggcttcagaacaatctggtgatccatttcacgtacaacagaatcagaaaaggaaactcc 11085260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 33062724 - 33062944
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgacggcttgaat 127  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  33062724 aaacacagtcctaaacatgcatcaaggtgatacacgaaaggctcacaaataacaaactcaaacccctagatgatctattcttcaaaatgacggcttgaat 33062823  T
Q  128 tcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaac 227  Q
      |||||||| ||||| |||||||||||||||| |||||||||| |||||  || ||||||||||||||||||||| |||||||| || ||||| |||||    
T  33062824 gattctctagatcttccagtcttgtttaaatactgaagcaatacgggtcagtaaacttgttgggcttcagaacaattcggtgatcaatctcacgaacaac 33062923  T
Q  228 aaaaccagaaaagaaaactcc 248  Q
    | ||||||||||| |||||||    
T  33062924 ataaccagaaaaggaaactcc 33062944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 17012332 - 17012540
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||| |||||| | |||| ||||||| | ||||||||||||||||||||| |||     
T  17012332 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaagactcacaaataacatactcaaaccactagatgatctattcttcaaaatgat 17012430  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttc 218  Q
     |||||||| | ||||||||||||| |||||||||||||||| ||||||||| ||||||  || |||||| ||||| |||||||||||||||||||||||    
T  17012431 agcttgaatccatctctaggtcttccagtcttgtttaaatactgaagcaataaaggtcagtaaacttgttaggcttgagaacaatccggtgatccatttc 17012530  T
Q  219 acgtacaaca 228  Q
    ||| ||||||    
T  17012531 acgaacaaca 17012540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 52436638 - 52436416
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgacggcttgaat 127  Q
    ||||||| | |||||||| ||||||||||||||||||||| |||||| | ||||||||||||||| || |  || ||||||||||| |||||||||||||    
T  52436638 aaacacagttctaaacatgcatcaagatgatacacgaaagactcacaaataacagactcaaaaccttaaacaatatattcttcaaaatgacggcttgaat 52436539  T
Q  128 tcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttcac--gtac 224  Q
      |||||||| ||||| |||||||||||||||| |||||||||| ||||| ||||  |||||||||||||||||||| |||||||| |||||||    ||    
T  52436538 gattctctagttcttccagtcttgtttaaatactgaagcaatacgggtcagtaaactttgttgggcttcagaacaat-cggtgatctatttcacaaaaac 52436440  T
Q  225 aacaaaaccagaaaagaaaactcc 248  Q
    |||| ||||||||||| |||||||    
T  52436439 aacagaaccagaaaaggaaactcc 52436416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 17038652 - 17038716
Alignment:
Q  113 aatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca 177  Q
    ||||||||||| | ||| |||||||||||||  ||||||||||||||| ||||||||||||||||    
T  17038652 aatgacggcttcagttcctctctaggtcttcctgtcttgtttaaatactgaagcaatacaggtca 17038716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 8902354 - 8902400
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcaca 76  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||    
T  8902354 aaacacaatcctaaacttgcatcaagatgatacaagaaaggctcaca 8902400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 23541575 - 23541801
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  23541575 tacaactcaaa-cacaatcctaaacatgcatcaagatgatacacgaaaggctcacaaaaacagactcaaaaccctagatgatctattcttcaaatgacag 23541673  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  23541674 cttgaatcattctctaggtcttctagtcttgtttaaatactgaagcaatacagatcattaatcttgttgggcttcagaacaatccggtgatccatttcac 23541773  T
Q  221 gtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||| ||||||||||| |||||||    
T  23541774 gtacaacataaccagaaaaggaaactcc 23541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 46739092 - 46738865
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  46739092 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattctttagatgacgg 46738994  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    ||||||| ||||||||||||||| ||||||||| |||||| |||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  46738993 cttgaatacttctctaggtcttccagtcttgttgaaatactgaagcaatacgggtcagtaaaacttgttgggcttctgaacaatccggtgatccatttca 46738894  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||  ||||| || |||||||| |||||||    
T  46738893 cgatcaacagaatcagaaaaggaaactcc 46738865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 19894639 - 19894416
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  19894639 tacaactcaaa-cacattcctaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaa-ccctagatgatctattcttcaaatgacag 19894542  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    |||||||  ||||||| |||||| | |||||||||||||| |||||||||  |||||  || ||||||||||||||||||||||||||||||||||||||    
T  19894541 cttgaatgattctctatgtcttccaatcttgtttaaatactgaagcaataagggtcagtaaacttgttgggcttcagaacaatccggtgatccatttcac 19894442  T
Q  221 gtacaacaaaaccagaaaagaaaact 246  Q
    |||||||| || ||||||||||||||    
T  19894441 gtacaacagaatcagaaaagaaaact 19894416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 24143466 - 24143692
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||     
T  24143466 tacaactcaaa-cacagtcctaagcatgtatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatatattcttcaaacagcga 24143564  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    |||||||  |||||||||||||| |||||||||||||||  |||| ||||| |||||  || ||||||||||||||||||||||||||||||||||||||    
T  24143565 cttgaatgattctctaggtcttccagtcttgtttaaatattgaagtaatacgggtcagtaaacttgttgggcttcagaacaatccggtgatccatttcac 24143664  T
Q  221 gtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||| ||||||||||| |||||||    
T  24143665 gtacaacagaaccagaaaaggaaactcc 24143692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 22555300 - 22555531
Alignment:
Q  17 aaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaat 115  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  22555300 aaaatacaactcaaa-cacagtcctaaacatgcatcaagatgatacacaaaaggctcacataaacagactcaaaatcctagatgatctattcttcaaaat 22555398  T
Q  116 gacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccat 215  Q
    ||||||||||||  | |||||||| ||| ||||| |||||||||| ||| |||||| ||| || |||||||||||||||||||| |||||||||||||||    
T  22555399 gacggcttgaataatgctctaggttttccagtctcgtttaaatactgaaacaatacgggttattaatcttgttgggcttcagaagaatccggtgatccat 22555498  T
Q  216 ttcacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||  ||||| || |||||||| |||||||    
T  22555499 ttcacgatcaacagaatcagaaaaggaaactcc 22555531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 11324976 - 11324776
Alignment:
Q  17 aaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaat 115  Q
    |||||||||||||||   || |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11324976 aaaatacaactcaaatg-cagtcctaaacatgcatcaagatgatacactaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaaat 11324878  T
Q  116 gacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccat 215  Q
    ||||| ||||||  | ||||| |||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  11324877 gacggtttgaataatgctctacgtcttccagtcttgtttaaatactgaagcaatacgggtcattaatcttgttgggcttcagaacaattcggtgatccat 11324778  T
Q  216 tt 217  Q
    ||    
T  11324777 tt 11324776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 25354462 - 25354307
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25354462 tacaactcaaa-cacagtcctaaacatgcatcaagatgacacacgaaaggctcacataaacagactcaaaaccctagataatctattcttcaaatgacgg 25354364  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca 177  Q
    |||||||  ||||||||| |||| |||||||||||||||| |||||||||| |||||    
T  25354363 cttgaataattctctaggccttccagtcttgtttaaatactgaagcaatacgggtca 25354307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 15687528 - 15687336
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaatgacg 119  Q
    ||||||||||| |||| |||||| ||| ||||||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  15687528 tacaactcaaa-cacagtcctaagcatgcatcaagatgatacacgaaagactcacaaataacagactcaaaaccctaaatgatctattcttcaaatgacg 15687430  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatccggtgatc 212  Q
    ||||||||  |    ||||||||  ||||||||||| |||| |||||||||  ||||| || | ||||||||||||||||||||  ||||||||    
T  15687429 gcttgaatgatgaattaggtcttgcagtcttgtttagatactgaagcaatatgggtcagaacaacttgttgggcttcagaacaaaacggtgatc 15687336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 11905446 - 11905608
Alignment:
Q  41 taaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaattcttctctaggtc 140  Q
    ||||||| || ||||||||||||||||||||||||| | ||| |||||||| |||| | ||| | |||||||||||||||||| |||  |||  ||||||    
T  11905446 taaacatgcaacaagatgatacacgaaaggctcacaaatacaaactcaaaaacctaaaagatttgttcttcaaatgacggcttcaataattcattaggtc 11905545  T
Q  141 ttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaa 202  Q
    ||  ||||||| |||||||| |||||||||| ||||| || | ||||||||||||||||||||    
T  11905546 ttgcagtcttgattaaatactgaagcaatacgggtcagaacaacttgttgggcttcagaacaa 11905608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 31971382 - 31971450
Alignment:
Q  135 taggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaa 202  Q
    |||||||| ||||||||| || |||| |||||||||  ||| |||| ||| ||||||||||||||||||    
T  31971382 taggtcttgtagtcttgtatatatactgaagcaatatgggttataatatcctgttgggcttcagaacaa 31971450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 48797446 - 48797219
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaa-tgacg 119  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48797446 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaaatgacg 48797348  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||  || |||||||| ||||||||||||||||||||||||||||    
T  48797347 gcttgaatgcttctctaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtaaacttgttggacttcagaacaatccggtgatccatttca 48797248  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||| | ||||||||||  |||||||    
T  48797247 cgtacaatagaaccagaaaaagaaactcc 48797219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 7620413 - 7620639
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  7620413 tacaactcaaa-ctcagtcctaaacatgcatcaagatgatacacgaaagggtcacataaacagactcaaaaccctagatgatctattcttcaaatgacga 7620511  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  7620512 cttgaatacttctctaggtcttccagtcttgtttaaatactaaagcaatacgagtcattaatcttgttgggcttcagaacaatcctgtgatccatttcac 7620611  T
Q  221 gtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||||||| || ||||| |||||||    
T  7620612 gtacaacaaaatcataaaaggaaactcc 7620639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 3286110 - 3285904
Alignment:
Q  40 ctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaattcttctctaggt 139  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |||||||||    
T  3286110 ctaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttgaaattacggcttcaattcctctctaggt 3286011  T
Q  140 cttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaacaaaaccagaaaa 239  Q
    |||| |||||||||||||||| ||| ||||||| ||||  || |||||||||||||||||||||||||||||||||||||||  ||||| || |||| ||    
T  3286010 cttccagtcttgtttaaatactgaaacaatacaagtcagtaaacttgttgggcttcagaacaatccggtgatccatttcacgatcaacagaatcagataa 3285911  T
Q  240 gaaaact 246  Q
    | |||||    
T  3285910 ggaaact 3285904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 11628969 - 11629197
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| |||| |||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  11628969 tacaactcaaa-cacagtcctaaacatgcttcaagatgatacacgaaaggctcacaaataacagactcaaaaccctagatgatctattcttcaaaatgac 11629067  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttc 218  Q
    |||||||||  |||| ||||||||| ||| |||||||||||| |||||||||| |||||  || |||||||||||| |||||||||||||||||||||||    
T  11629068 ggcttgaataattctttaggtcttccagttttgtttaaatactgaagcaatacgggtcagtaaacttgttgggctttagaacaatccggtgatccatttc 11629167  T
Q  219 acgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||| |||||| ||||||||||| |||||||    
T  11629168 acgaacaacagaaccagaaaaggaaactcc 11629197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 12561041 - 12560813
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaat--gac 118  Q
    ||||||||||| || | |||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  |||    
T  12561041 tacaactcaaa-catagtcctaaacatgcataaagatgatacacgaaaggctcacataaatagactcaaaatcctagatgatctattcttcaaatttgac 12560943  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttc 218  Q
    ||||||||| ||||||||||||||| | ||||||||| |||| |||| ||||| |||||  || |||||||||||||||||||||| |||||||| ||||    
T  12560942 ggcttgaatacttctctaggtcttccaatcttgtttatatactgaagtaatacgggtcagtaaacttgttgggcttcagaacaatctggtgatccgtttc 12560843  T
Q  219 acgtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||||| ||||||||||| |||||||    
T  12560842 acgtacaacagaaccagaaaaggaaactcc 12560813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 14975765 - 14975990
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| ||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  14975765 tacaactcaaa-ctcagtcctaaacatgcattaagatgatacacgaaagactcacataaaca--ctcaaaaccctagatgatctattcttcagatgacgg 14975861  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||  |||||||||||||| |||||||||||||||  |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14975862 cttgaatcattctctaggtcttccagtcttgtttaaatattgaagcaatacgggtcagtaaaacttgttgggcttcagaacaatccggtgatccatttca 14975961  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
     |  ||||| || |||||||| |||||||    
T  14975962 agatcaacagaatcagaaaaggaaactcc 14975990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 15405241 - 15405466
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| ||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  15405241 tacaactcaaa-ctcagtcctaaacatgcattaagatgatacacgaaagactcacataaaca--ctcaaaaccctagatgatctattcttcagatgacgg 15405337  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||  |||||||||||||| |||||||||||||||  |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  15405338 cttgaatcattctctaggtcttccagtcttgtttaaatattgaagcaatacgggtcagtaaaacttgttgggcttcagaacaatccggtgatccatttca 15405437  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
     |  ||||| || |||||||| |||||||    
T  15405438 agatcaacagaatcagaaaaggaaactcc 15405466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 14985004 - 14985226
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||| || ||||||||| ||||| |    
T  14985004 tacaactcaaa-ctcagtcctaaacatgcattaagatgatacacgaaaggctcacataaaca--ctcaaaaccctagataatatattcttcagatgacag 14985100  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||  |||||||||||||| | |||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14985101 cttgaatcattctctaggtcttcca-tcttgtttaaatactgaagcaatacgggtcagtaaaacttgttgggcttcagaacaatccggtgatccatttca 14985199  T
Q  220 cgtacaacaaaaccagaaaagaaaact 246  Q
    ||  ||||| || ||||||||||||||    
T  14985200 cgatcaacataatcagaaaagaaaact 14985226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 15414615 - 15414837
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||| || ||||||||| ||||| |    
T  15414615 tacaactcaaa-ctcagtcctaaacatgcattaagatgatacacgaaaggctcacataaaca--ctcaaaaccctagataatatattcttcagatgacag 15414711  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||  |||||||||||||| | |||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  15414712 cttgaatcattctctaggtcttcca-tcttgtttaaatactgaagcaatacgggtcagtaaaacttgttgggcttcagaacaatccggtgatccatttca 15414810  T
Q  220 cgtacaacaaaaccagaaaagaaaact 246  Q
    ||  ||||| || ||||||||||||||    
T  15414811 cgatcaacataatcagaaaagaaaact 15414837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 30226400 - 30226627
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||     
T  30226400 tacaactcaaa-cacagtcctaaacatgcatcaaggtgatacacgaaaggctcacataaacagactcaaaacccttgatgatctattcttcaaaatgaca 30226498  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    ||||||||  ||||| | || ||  |||||||||||||||| || |||||||||||||  |  ||||||| ||||||||||||| |||||||||||||||    
T  30226499 gcttgaataattctccaagtgttacagtcttgtttaaatactgaggcaatacaggtcagtagacttgttgagcttcagaacaattcggtgatccatttca 30226598  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    |  |||||| ||||||||||| |||||||    
T  30226599 caaacaacagaaccagaaaaggaaactcc 30226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 24049778 - 24049932
Alignment:
Q  17 aaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaat 115  Q
    ||||||||||||||| |||| |||||| ||| |||||| ||||||||||||||||||||| | ||||||||||||||| || |||||||||  |||||||    
T  24049778 aaaatacaactcaaa-cacagtcctaagcatgcatcaaaatgatacacgaaaggctcacaaagaacagactcaaaaccttaaatgatctatatttcaaat 24049876  T
Q  116 gacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatac 171  Q
    ||||||||||||  |    ||||||||  |||||||||||||||| ||||||||||    
T  24049877 gacggcttgaataatgaattaggtcttgcagtcttgtttaaatactgaagcaatac 24049932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 11560330 - 11560131
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaatgacg 119  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||| |  ||||||| |||| |||| ||||||||||||||||||||||    
T  11560330 tacaactcaaa-cacagtcctaaacattcatcaagatgatacacgaaaggctaacaaattacagactgaaaaacctaaatgatctattcttcaaatgacg 11560232  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatccggtgatccatttc 218  Q
    ||||  ||  |    ||||||||  ||||||| |||||||| |||||||||  ||||| || |  || ||||||||||||||||  ||||||||| ||||    
T  11560231 gcttagatgatgtattaggtcttgcagtcttgattaaatactgaagcaataggggtcagaacaaatttttgggcttcagaacaa-acggtgatccgtttc 11560133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 4547626 - 4547449
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcaca--taaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaat 127  Q
    |||| ||||||| ||||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||| | ||||||  |||| |||||||  ||||||    
T  4547626 aaactcaatccttaacatgcatcaaggtgatacacgaaagactcacaatgaaacagactcaaaacccta-aagatctaaacttc-aatgacgatttgaat 4547529  T
Q  128 tctt-ctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatcc 205  Q
      ||    |||||||| |||||| ||||| |||  ||||||||| |||  ||||  ||||||||||||||||||||||||    
T  4547528 ggttgaattaggtcttgtagtctcgtttatatattgaagcaatataggatataacttcttgttgggcttcagaacaatcc 4547449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 20497983 - 20497752
Alignment:
Q  17 aaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaa-t 115  Q
    ||||||||||||||| |||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20497983 aaaatacaactcaaa-cacagtcctaaacatgcattaggatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaaat 20497885  T
Q  116 gacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccat 215  Q
    ||||||||||||  | ||||||||||||  |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  20497884 gacggcttgaatgatgctctaggtcttcctgtcttgtttaaataccgaagcaatacgggtcattaatcttgttgggcttcataacaatccggtgatccat 20497785  T
Q  216 ttcacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||| ||||| || |||||||| |||||||    
T  20497784 ttcacgttcaacagaatcagaaaaggaaactcc 20497752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 17920612 - 17920386
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| | || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17920612 tacaactcaaa-ctcagtcctaaacatgcatcaagaggatacacgaaaggctcacataaacagactcaaaaccctagatgatttattcctcaaatgacgg 17920514  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||| | ||  |||||||||||||||||||||||| |||||||  ||||    
T  17920513 cttgaatacttctctaggtcttccagtcttgtttaaatactgaagcaatacgggttagaagacttgttgggcttcagaacaatccgatgatccaaatcac 17920414  T
Q  221 gtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||| ||||||||||| |||||||    
T  17920413 gtacaacagaaccagaaaaggaaactcc 17920386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 7897742 - 7897515
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaa-tgacg 119  Q
    ||||||||||| |||| |||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7897742 tacaactcaaa-cacagtcctaaacatgcatcaaaattatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaaatgacg 7897644  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||| | ||||||||||||| |||||||||||||||| |||||||||| |||||  || ||||||||||||||||||||||||||||||||  |||    
T  7897643 gcttgaatacctctctaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtaaacttgttgggcttcagaacaatccggtgatccaaatca 7897544  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||| ||| ||||| ||||| |||||||    
T  7897543 cgtaccacagaaccaaaaaaggaaactcc 7897515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 26183061 - 26182835
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| || | |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  26183061 tacaactcaaa-cagagtcctaaacatgcatcaagatgatacacgaaagtctcacataaacatactcaaaaccctagatgatctattcttcaaaatgacg 26182963  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    | ||||||  ||||||||||| || |||||||||||||||| |||||||||| |||||  || |||||| | |||||||| |||  ||||||||||||||    
T  26182962 ggttgaataattctctaggtcatccagtcttgtttaaatactgaagcaatacgggtcagtaaacttgtt-gccttcagaaaaatttggtgatccatttca 26182864  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||||| || |||||||| |||||||    
T  26182863 cgtacaacagaatcagaaaaggaaactcc 26182835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 20286891 - 20287120
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgac 118  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||    
T  20286891 tacaactcaaaacacagtcctaaacatgcatcaaaatgatacacgaaaggctcacaaataatagactcaaaaccctagatgatctattcttcaaaatgac 20286990  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    |||||||||  ||||||| |||||| ||||||||||||| || |||| ||||| ||||| || |  |||||| ||| ||||||||| |||||||||||||    
T  20286991 ggcttgaataattctctaagtcttccagtcttgtttaaaaactgaagaaatacgggtcagtacactttgttgtgctccagaacaat-cggtgatccattt 20287089  T
Q  218 cacgtacaacaaaaccagaaaagaaaactcc 248  Q
    |||  |||||| ||||||||||| |||||||    
T  20287090 cacaaacaacagaaccagaaaaggaaactcc 20287120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 24117976 - 24118066
Alignment:
Q  113 aatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacagg-tcataaatcttgttgggcttcagaacaa 202  Q
    ||||||||||||||| |||   ||||||||  | |||||| || |||||||||||||||||| | |||| ||| |||| ||||||||||||    
T  24117976 aatgacggcttgaatgcttgattaggtcttgcattcttgtatatataccgaagcaatacaggctaataagtctcgttgcgcttcagaacaa 24118066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 17280220 - 17280446
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17280220 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcacatagacagactcaaaaccctagatgatctattcttcaaatgacgg 17280318  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    |||||||  |||||||||||||| |||||||||||||||| ||||||||||  ||||  || ||||||||||| ||||||||||| |||||||||||||     
T  17280319 cttgaatcattctctaggtcttccagtcttgtttaaatactgaagcaatacgagtcagtaaacttgttgggctacagaacaatccagtgatccatttcag 17280418  T
Q  221 gtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||||| ||||||||||| |||||||    
T  17280419 gtacaacagaaccagaaaaggaaactcc 17280446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 8727175 - 8727379
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8727175 tacaactcaaa-cacagtcctaaacatgcatcaaaatgatacacgaaaggctcacataaacaaactcaaaaccctagatgatctattcttcaaatgacgg 8727273  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    ||||||| ||||||||||||||| | |||||||||||||| |||||||||| |||||  || ||||||||||||||||||||||||||||||||||||||    
T  8727274 cttgaatacttctctaggtcttccaatcttgtttaaatactgaagcaatacgggtcagtaaacttgttgggcttcagaacaatccggtgatccatttcac 8727373  T
Q  221 gtacaa 226  Q
    ||||||    
T  8727374 gtacaa 8727379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 37155352 - 37155125
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  37155352 tacaactcaaa-cacaatcctaaacatgcatcaagatgatacacgaaaggctaacataaatagactcaaaatcctagatgatctattcttcaaaatgacg 37155254  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttc 218  Q
    |||||||| ||||| ||||||||| |||||||||||||||  |||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  37155253 gcttgaatacttctttaggtcttccagtcttgtttaaatattgaagcaatacgggtcagtaaaacttgttgggcttcagaacaattcggtgatccatttc 37155154  T
Q  219 acgtacaacaaaaccagaaaagaaaactc 247  Q
    |||  ||||| || |||||||| ||||||    
T  37155153 acgatcaacataatcagaaaaggaaactc 37155125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 39081296 - 39081523
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |    
T  39081296 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacatgaaaggctcacataaacagactcaaaaccctagttgatctattcttcagatgacag 39081394  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
     |||||| |||||||| |||||  |||||||||||||||| |||||||||  ||| | |||| ||||||||||||||||||||||||| |||||||||||    
T  39081395 attgaatacttctctaagtctttcagtcttgtttaaatactgaagcaataggggttagtaaaacttgttgggcttcagaacaatccggcgatccatttca 39081494  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    |   ||||| || |||||||| |||||||    
T  39081495 caatcaacagaatcagaaaaggaaactcc 39081523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 17880566 - 17880338
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaatgacg 119  Q
    ||||||||||| |||| |||||||||| ||| |||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||    
T  17880566 tacaactcaaa-cacagtcctaaacatgcattaagatgatacacgaaaggctcacaaataacagactcaaaatcctacatgatctattcttcaaatgacg 17880468  T
Q  120 gcttgaattc-ttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttc 218  Q
    |||||||||  |||||||||||||| |||||| ||||||||| |||||||||| |||||  ||  |||||||||||| ||||||| ||||||||||||||    
T  17880467 gcttgaattaattctctaggtcttccagtcttatttaaatactgaagcaatacgggtcagtaaaattgttgggcttcggaacaattcggtgatccatttc 17880368  T
Q  219 acgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||| | | || |||||| |||| |||||||    
T  17880367 acgaaaagcagaaccagtaaaggaaactcc 17880338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 33465988 - 33465760
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||| | |||| ||||||||||||| |  |||||||||||||| ||||    
T  33465988 tacaactcaaa-cacagtcctaaacatgcatcaagatgatatacgaaaggctcacaaataacaaactcaaaaccctaaacaatctattcttcaaaatgac 33465890  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    || ||||||  |||| ||||||||| |||||||||||||||| |||||||||| ||||| || |  |||||||||||||||||||| |||||||||||||    
T  33465889 ggtttgaataattctttaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtacactttgttgggcttcagaacaat-cggtgatccattt 33465791  T
Q  218 cacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||   |||||| ||||||||||| |||||||    
T  33465790 cataaacaacagaaccagaaaaggaaactcc 33465760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 22876365 - 22876573
Alignment:
Q  43 aacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgacggcttgaattcttctctaggtc 140  Q
    ||||| |||||||| |||||| |||||||||||| | |||| ||||||||||||| |  |||||||| ||||| |||||||||||||  |||||||||||    
T  22876365 aacatgcatcaagaggatacaagaaaggctcacaaataacatactcaaaaccctaaacaatctattcctcaaaatgacggcttgaatgattctctaggtc 22876464  T
Q  141 ttctagtcttgtttaaataccgaagcaatacaggtca-ta-aatcttgttgggcttcagaacaatccggtgatccatttca-cgtacaacaaaaccagaa 237  Q
    ||| ||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||| | |||||| ||||||    |||||| ||||||||    
T  22876465 ttccagtcttgtttaaataccgaagcaatac-ggtcagtacactcttgttgggcttcagaacaat-cagtgatctatttcataaaacaacagaaccagaa 22876562  T
Q  238 aagaaaactcc 248  Q
    ||| |||||||    
T  22876563 aaggaaactcc 22876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 23250077 - 23250246
Alignment:
Q  38 tcctaaacatacatcaagatgatacacgaaaggctcaca--taa-acagactcaaaaccctagatgatctattcttcaaatgacggcttgaattcttctc 134  Q
    |||| ||||| ||||||| ||||||||||||||||||||  ||| | ||||||||||||||| | ||||||  ||||||| ||||| |||||||||  |     
T  23250077 tccttaacatgcatcaaggtgatacacgaaaggctcacaattaacagagactcaaaacccta-aagatctaaacttcaaa-gacggattgaattctgatt 23250174  T
Q  135 taggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatcc 205  Q
    |||||||| |||||||||||| |||  |||| ||||| ||| ||||  | ||||||||||||||||||||||    
T  23250175 taggtcttgtagtcttgtttacatattgaagaaatacgggttataacttgttgttgggcttcagaacaatcc 23250246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 9037045 - 9037236
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaattc 129  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  9037045 aaacacagtcctaaacatgcatcaagatgatacacgaaaggttcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaatca 9037144  T
Q  130 ttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcacg 221  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||  || |||||||||||| ||||||||||| ||||||||||||||    
T  9037145 ttctctaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtaaacttgttgggctttagaacaatccgatgatccatttcacg 9037236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 8749370 - 8749597
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||| ||    
T  8749370 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggttcataaaaacagactcaaaaccctagatgatatattcttcaaatgatgg 8749468  T
Q  121 cttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
    |||||||  |||||||||||||| |||||||||||||||  ||| |||||| ||| |  || ||||||||||||||||||||| ||||||||||||||||    
T  8749469 cttgaatgattctctaggtcttccagtcttgtttaaatattgaaacaatacgggttagtaaacttgttgggcttcagaacaattcggtgatccatttcac 8749568  T
Q  221 gtacaac-aaaaccagaaaagaaaactcc 248  Q
    ||||| | ||||||||||||| |||||||    
T  8749569 gtacatcaaaaaccagaaaaggaaactcc 8749597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 9031233 - 9031022
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| |||| |||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  9031233 tacaactcaaa-cacagtcctaaacatgcattaagatgatacacgaaaagctcacacaaacagactcaaaatcctagatgatctattcttcaaaatgacg 9031135  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    ||||||||                 |||||||||||||||| ||||||||||  ||||  || ||||||| |||||||||||||||||||||||||||||    
T  9031134 gcttgaat----------------gagtcttgtttaaatactgaagcaatacgagtcagtaaacttgttgtgcttcagaacaatccggtgatccatttca 9031051  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||  ||||| || || ||||| |||||||    
T  9031050 cgatcaacagaatcaaaaaaggaaactcc 9031022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 11564411 - 11564326
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctat 106  Q
    ||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11564411 tacaactcaaagcacaatcctaaacatgcatcaaagtgatacacgaaaggctcacataaatagactcaaaaccctagatgatctat 11564326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 11561240 - 11561164
Alignment:
Q  101 atctattcttcaaatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca 177  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||| || ||||||||||||||||    
T  11561240 atctattcttcaaatgacggcttgaatgattctctaggtcttccagtcttgtttaaacactgaagcaatacaggtca 11561164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 19216285 - 19216512
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacgg 120  Q
    ||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19216285 tacaactcaaa-cacagtcttaaacatgcatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatttattcttcaaatgacgg 19216383  T
Q  121 cttgaattcttctctaggtcttctagtcttg-tttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||  ||||||| ||||||  | |||| ||||||||| |||||||||| ||||| ||  |||||||||||||||||||||||| |||||||  |||    
T  19216384 cttgaataattctctaagtcttcctgacttgttttaaatactgaagcaatacgggtcagaagacttgttgggcttcagaacaatccgatgatccaaatca 19216483  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||||||||| ||||||||||| |||||||    
T  19216484 cgtacaacagaaccagaaaaggaaactcc 19216512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 16137408 - 16137181
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16137408 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcgcataaacagactcaaaaccctagatgatctattcttcaaaatgacg 16137310  T
Q  120 gcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttca 219  Q
    |||||||||||||||||||||| | |||||||| ||||||| |||||||||| ||| |  || ||||||||||||||||| |||||||||||| |||||     
T  16137309 gcttgaattcttctctaggtctcccagtcttgtataaatactgaagcaatacgggttagtaaacttgttgggcttcagaataatccggtgatctatttcg 16137210  T
Q  220 cgtacaacaaaaccagaaaagaaaactcc 248  Q
    |   ||||| || |||||||| |||||||    
T  16137209 caatcaacagaatcagaaaaggaaactcc 16137181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 9384953 - 9385173
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgacggcttgaat 127  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |  ||||| ||||| |||||||||||| |||    
T  9384953 aaacacagtcgtaaacatgcatcaagatgatacacgaaaggctcacaaataacagactcaaaaccctaaacaatctaatcttcaaaatgacggcttaaat 9385052  T
Q  128 tcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaa 226  Q
      | |||||||||||| | |||||||||||||| |||||||||| ||||| ||||  ||||||||||| |||||||  ||||||||||||||||  ||||    
T  9385053 gatactctaggtcttccactcttgtttaaatactgaagcaatacgggtcagtaaactttgttgggctttagaacaa-acggtgatccatttcacaaacaa 9385151  T
Q  227 caaaaccagaaaagaaaactcc 248  Q
    || ||||||||||| |||||||    
T  9385152 cagaaccagaaaaggaaactcc 9385173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 32452318 - 32452545
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgac 118  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| || |  || |||||||| |||||||    
T  32452318 tacaactcaaa-cacaatcctaaacatgcatcaagatgatacacgaaaggctcacaaataacagactcaaaaccttaaacaatatattcttcaaaatgac 32452416  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    |||||||||  |||||||||||||  | |||||||||||||| |||||||||| ||||| || |   |||||||||||||||||||  ||||||||||||    
T  32452417 ggcttgaataattctctaggtctttcactcttgtttaaatactgaagcaatacgggtcagtacaatatgttgggcttcagaacaat-tggtgatccattt 32452515  T
Q  218 cacgtacaacaaaaccagaaaagaaaactc 247  Q
    ||   |||||| ||||||||||| ||||||    
T  32452516 cataaacaacagaaccagaaaaggaaactc 32452545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 15002978 - 15002789
Alignment:
Q  33 cacaatcctaaacatacatcaagatgatacacgaaaggctcac-ataaacagactcaaaaccctagatgatctattcttc-aaatgacggcttgaattct 130  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |  ||||||||||||| |||| |  ||||||| ||| ||||| ||||| ||||  |    
T  15002978 cacaatcctaaacatgcatcaagatgatacacaaaaggctcacaactaacagactcaaaatcctaaacaatctattattcaaaatgtcggctggaataat 15002879  T
Q  131 tctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttcac 220  Q
     || ||||||||| |||||||||||||||| |||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||||    
T  15002878 cctttaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtacattttgttgggcttcagaacaat-cggtgatccatttcac 15002789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 12444549 - 12444443
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttc-aaatgacg 119  Q
    ||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12444549 tacaactcaaa-cacagtcctaaacatgcatcaaaatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaaatgacg 12444451  T
Q  120 gcttgaat 127  Q
     |||||||    
T  12444450 acttgaat 12444443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 20003433 - 20003556
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgac 118  Q
    ||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||  | ||||||| |||||| |||||||    
T  20003433 tacaactcaaa-cacagtcctaaacatgcatcaaaatgatacacgaaaggctcacaaataacagactcaaaacctcatatgatctcttcttcaaaatgac 20003531  T
Q  119 ggcttgaattcttctctaggtcttc 143  Q
    |||||||||  ||||||||||||||    
T  20003532 ggcttgaataattctctaggtcttc 20003556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 15004111 - 15003975
Alignment:
Q  33 cacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgacggcttgaattct 130  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||| |||| |  ||||||||||| ||||| | | ||||||  |    
T  15004111 cacagtcctaaacatgcatcaagatgatatacgaaaggctcacaaataacagactcaaaatcctaaacaatctattcttcaaaatgtcagtttgaataat 15004012  T
Q  131 tctctaggtcttctagtcttgtttaaataccgaagca 167  Q
     || ||||||||| |||||||||||||||| ||||||    
T  15004011 cctttaggtcttccagtcttgtttaaatactgaagca 15003975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 18766009 - 18766236
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  18766009 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcacaaataacagactcaaaaccctagatgatctattcttcaaaatgac 18766107  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    |||||||||  |||||||||||||| |||||||||||||||| |||||||||| ||||| ||||  |||||||||||||||||||| ||||||||||| |    
T  18766108 ggcttgaataattctctaggtcttccagtcttgtttaaatactgaagcaatacgggtcactaaactttgttgggcttcagaacaat-cggtgatccatat 18766206  T
Q  218 cacgtacaacaaaaccagaaaagaaaactc 247  Q
    || | |||||| ||||||||||| ||||||    
T  18766207 catgaacaacagaaccagaaaaggaaactc 18766236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 66 - 248
Target Start/End: Complemental strand, 18606379 - 18606197
Alignment:
Q  66 aaaggctcacataaacagactcaaaaccctagatgatctattcttcaaatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaag 165  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||  ||||| ||||||||||||||| |||||||||||||||  ||||    
T  18606379 aaaggctcacataaacagactcaaaactctagatgatttattctttaaatgacggtctgaatacttctctaggtcttccagtcttgtttaaatattgaag 18606280  T
Q  166 caatacaggtcataaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaacaaaaccagaaaagaaaactcc 248  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||    
T  18606279 caatacgggtcattaatcttgttgggcttcagaacaatccggtaatccatttcacgtacaacagaatcagaaaaggaaactcc 18606197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 13314785 - 13314566
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgacggcttgaat 127  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||| |  |||||||||||||| |||||||||||||    
T  13314785 aaacacagtcctaaacatgcatcaagatgataaacgaaaggctcacaaataacagactcaaaaccctaaacaatctattcttcaaaatgacggcttgaat 13314686  T
Q  128 tcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccatttcacgtacaa 226  Q
      |||| ||||||||| |||||||||||||||| |||||||||  ||||| || |  |||||||||||||||||||| |||||||||||||||   ||||    
T  13314685 aattctttaggtcttccagtcttgtttaaatactgaagcaatatgggtcagtacactttgttgggcttcagaacaat-cggtgatccatttcataaacaa 13314587  T
Q  227 caaaaccagaaaagaaaactc 247  Q
    || ||||||||||| ||||||    
T  13314586 cagaaccagaaaaggaaactc 13314566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 29566343 - 29566571
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttc-aaatgac 118  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |  ||||||||||| |||||||    
T  29566343 tacaactcaaa-cacagtcctaaacatgcatcaagatgatacacgaaaggctcacaaataacagactcaaaaccctaaacaatctattcttcaaaatgac 29566441  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    ||| |||||  |||| ||||||||| |||||||||||||||  |||||||||| || || || |  |||||||||||||||||||| | |||||||||||    
T  29566442 ggcatgaataattctttaggtcttccagtcttgtttaaataatgaagcaatacgggccagtacactttgttgggcttcagaacaat-cagtgatccattt 29566540  T
Q  218 cacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||    ||||| ||||||||||| |||||||    
T  29566541 cataatcaacagaaccagaaaaggaaactcc 29566571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 3447 - 3607
Alignment:
Q  16 aaaaatacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacataaacagactcaaaaccctagatgatctattcttcaaat 115  Q
    |||| ||||||||||| |||| || ||||||| |||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  3447 aaaattacaactcaaa-cacagtcttaaacatgcatcaagatgatacccgaaaggttcacacaaaccgactcaaaaccctagatgatctattcttcaaat 3545  T
Q  116 gacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca 177  Q
    ||| ||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  3546 gacagcttgaataattctctaggtcttctaatcttgtttaaatactgaagcaatacaggtca 3607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 16799 - 16571
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| | || |||||||||  ||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  16799 tacaactcaaa-cgcagtcctaaacaagcatcaagatgatacacgcaaggctcacaaataacagactcaaaaccctagatgatctattcttcaaaatgac 16701  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtcataaatc-ttgttgggcttcagaacaatccggtgatccattt 217  Q
     ||||||||  ||||||||||||||||||||||||||||||| |||||||||| ||| |  |||| |||||||  |||| ||||||   |||||||| ||    
T  16700 agcttgaataattctctaggtcttctagtcttgtttaaatactgaagcaatacgggtgagtaatctttgttggatttcataacaat-tagtgatccaatt 16602  T
Q  218 cacgtacaacaaaaccagaaaagaaaactcc 248  Q
    |||| |||||| ||||||||||| |||||||    
T  16601 cacgaacaacagaaccagaaaaggaaactcc 16571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 36628 - 36856
Alignment:
Q  21 tacaactcaaaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgac 118  Q
    ||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||| | |||| ||||||||||||| |  |||||||||||||| ||||    
T  36628 tacaactcaaa-cacagtcctaaacatgcatcaagatgatatacgaaaggctcacaaataacaaactcaaaaccctaaacaatctattcttcaaaatgac 36726  T
Q  119 ggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca-taaatcttgttgggcttcagaacaatccggtgatccattt 217  Q
    || ||||||  |||| ||||||||| |||||||||||||||| |||||||||| ||||| || |  |||||||||||||||||||| |||||||||||||    
T  36727 ggtttgaataattctttaggtcttccagtcttgtttaaatactgaagcaatacgggtcagtacactttgttgggcttcagaacaat-cggtgatccattt 36825  T
Q  218 cacgtacaacaaaaccagaaaagaaaactcc 248  Q
    ||   |||||| ||||||||||| |||||||    
T  36826 cataaacaacagaaccagaaaaggaaactcc 36856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 1455 - 1531
Alignment:
Q  101 atctattcttcaaatgacggcttgaattcttctctaggtcttctagtcttgtttaaataccgaagcaatacaggtca 177  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||| || ||||||||||||||||    
T  1455 atctattcttcaaatgacggcttgaatgattctctaggtcttccagtcttgtttaaacactgaagcaatacaggtca 1531  T

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Target: scaffold0032 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 103445 - 103588
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcacata-aacagactcaaaaccctagatgatctattcttcaaa-tgacggcttgaat 127  Q
    ||||||| || |||| || |||||||||| || |||||  ||||||| | |||| ||||||||||||| || |||||||||||||| ||| |||||||||    
T  103445 aaacacagtcttaaatatgcatcaagatgttaaacgaacagctcacaaataacatactcaaaaccctaaataatctattcttcaaaatgatggcttgaat 103544  T
Q  128 tcttctctaggtcttctagtcttgtttaaataccgaagcaatac 171  Q
      |||| ||| ||||||| |||||||||||||| ||||||||||    
T  103545 agttctttagatcttctaatcttgtttaaatactgaagcaatac 103588  T

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Target: scaffold0480 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 11531 - 11708
Alignment:
Q  30 aaacacaatcctaaacatacatcaagatgatacacgaaaggctcaca--taa-acagactcaaaaccctagatgatctattcttcaaatgacggcttgaa 126  Q
    |||| ||||| | ||||| ||||||| ||||||||||||||||||||  ||| | ||||||||||||||| | ||||||  |||||| ||||||| ||||    
T  11531 aaactcaatctttaacatgcatcaaggtgatacacgaaaggctcacaattaacatagactcaaaaccctaaa-gatctaaacttcaa-tgacggcctgaa 11628  T
Q  127 ttcttctcta-ggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatcc 205  Q
    | | |   || |||||| |||||||||||| |||| |||||||||| ||| ||||  |||||||||| |||| ||||||||    
T  11629 t-cgtgaatatggtcttgtagtcttgtttatatactgaagcaatacgggttataacttcttgttgggattcaaaacaatcc 11708  T

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Target: scaffold0064 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 52635 - 52564
Alignment:
Q  135 taggtcttctagtcttgtttaaataccgaagcaatacaggtcataa-atcttgttgggcttcagaacaatcc 205  Q
    |||||||| ||||||||| |  |||| |||||||||| ||| |||| ||||||||||||||||||| |||||    
T  52635 taggtcttgtagtcttgtatttatactgaagcaatacgggttataacatcttgttgggcttcagaagaatcc 52564  T

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