View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_low_13 (Length: 248)
Name: NF2078_low_13
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40312531 - 40312287
Alignment:
| Q |
1 |
tgtctaacatcaaaagtaatacaaatgtcaaactaactaacaatatcaactttttattaaaaacaacaattatttagattcttaatacatctgtataaat |
100 |
Q |
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| T |
40312531 |
tgtctaacatcaacagtaatacaaatgtcaaagtaactaacaatatcaactttttattaaaaacaacaattatttagattcttaatacatctgtataaat |
40312432 |
T |
|
| Q |
101 |
ttttaagaca---attgtattaaattttaacttgtacaaacaacatgatacatttgtataaattttaacttggttataaaatgtacaattttcaatataa |
197 |
Q |
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| T |
40312431 |
ttttaagacagatattgtattaaattttaacttgtacaaacaacatgatacatttgtataaattttaacttggttataaaatgtacaattttcaatataa |
40312332 |
T |
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| Q |
198 |
tacatttatgataacatatgtaaatttacacatgatagaataatc |
242 |
Q |
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| T |
40312331 |
tacatttgtcataacatgtgtaaatttatacatgataaaataatc |
40312287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 34817580 - 34817622
Alignment:
| Q |
34 |
taactaacaatatcaactttttattaaaaacaacaattattta |
76 |
Q |
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| T |
34817580 |
taactaaaaatatcaactatttattgaaaacaacaattattta |
34817622 |
T |
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