View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2078_low_3 (Length: 406)
Name: NF2078_low_3
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 51905327 - 51905599
Alignment:
| Q |
17 |
catattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtatgaaggcaagaatcattcaagagtctataaagtttgcaagaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905327 |
catattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtatgaaggcaagaatcattcaagagtctataaagtttgcaagaaga |
51905426 |
T |
|
| Q |
117 |
atccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaac-aaataaaccaaccaaaatacttaatattttcaagaatatcaagctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905427 |
atccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaacaaaataaaccaaccaaaatacttaatattttcaagaatatcaagctt |
51905526 |
T |
|
| Q |
216 |
ccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcggtgaggctcggatggg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905527 |
ccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcggtgaggctcggatggg |
51905599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 51905636 - 51905711
Alignment:
| Q |
322 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905636 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
51905711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University