View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2078_low_5 (Length: 384)
Name: NF2078_low_5
Description: NF2078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2078_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 32551585 - 32551239
Alignment:
| Q |
11 |
cagagaacctaaagtggcaaaaatgcttcattttcatatcaacnnnnnnnnnnctaaattaaaaatagtttgacacaagcacttaattatcaacttcatc |
110 |
Q |
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| T |
32551585 |
cagagaacctaaagtggcaaaaatgcttcattttcatatcaacaaaaaaaa--ctaaattaaaaatagtttgacacaagcacttaattatcaacttcatc |
32551488 |
T |
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| Q |
111 |
attccattatttgtttgtaaccataaatcataaaaggcctgcagccaagttctacaaaaaacactcccattgaataataacattttcggcataatatatc |
210 |
Q |
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| T |
32551487 |
attccgttatttgtttgtaaccataaatcataaaaggc-tgcagccaagttctacaaaaaacactcccattgaataataacattttcggcataatatatc |
32551389 |
T |
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| Q |
211 |
aagcaatataataatctaacaacaaacatttatggcaccacgtcacacgtacatagctaacgaatgaggagaaagtgagtgtaagaagaaaaatatatgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551388 |
aagcaatataataatctaacaacaaacatttatggcaccacgtcacacgtacat-----acgaatgaggagaaagtgagtgtaagaagaaaaatatatgc |
32551294 |
T |
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| Q |
311 |
aacttaaaactcatttgaagccaatttgtcatatataaaaatgcataatcatctc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551293 |
aacttaaaactcatttgaagccaatttgtcatatataaaaatgcataatcatctc |
32551239 |
T |
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