View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_high_13 (Length: 252)
Name: NF20790_high_13
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 6179682 - 6179856
Alignment:
| Q |
70 |
gcggagacaaaagggacaattttgagttggaaccttcctctgttccaaaacatagtattgaatcatatagaagagaggtagagtgcagagtcgtttcatc |
169 |
Q |
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| T |
6179682 |
gcggagacaaaaggggcaattttgagttggaaccttcctctattccaaaacatagtattgaatcatatagaagagagatggagtgcagagtcatttcatc |
6179781 |
T |
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| Q |
170 |
tcaaggcatcgttagggggatgttggttcctcggcctccgacacatgaatgattgccatgtataccacctatgct |
244 |
Q |
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| T |
6179782 |
ttaaggcatcgttagggagatgttggttcctcggcctccgacacatggatgtttgccatgtataccacctatgct |
6179856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6179197 - 6179270
Alignment:
| Q |
1 |
caagtctaatttggagggtttggagcttgacggtaaagtggttgtggttccctgaggtgtgtttctgacgcgga |
74 |
Q |
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| T |
6179197 |
caagtctaatttggagggtttggagcttgacggtaaagtggttctggttccttgaggtgtgtttctgacgcgga |
6179270 |
T |
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