View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_high_5 (Length: 444)
Name: NF20790_high_5
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 26609166 - 26608762
Alignment:
| Q |
13 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
112 |
Q |
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| T |
26609166 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
26609067 |
T |
|
| Q |
113 |
aatattaagatcaggttatgaatgtagtcatattccctctttaggtnnnnnnnnnncttctaaatgtcaccaaattaagaggagataaaactggaaaatg |
212 |
Q |
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| T |
26609066 |
aatattaagatcagcttatgaatgtagtcatatttcctctttaggtaaaaaaaaaacttctaaatgtcaccaagttaagaggagataaaactggaaaatg |
26608967 |
T |
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| Q |
213 |
agtttataaatgagagacattcgtgattctattagtcgatttggatttaatgagttagacatgtaattaggttaatcaagatccaaatgtcaggtcctaa |
312 |
Q |
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| T |
26608966 |
agtttataaatgagagacattcgtgattctattaatcgatttggtattaatgagttagacatgtaattaggttaatcaagatccagatgtc--------- |
26608876 |
T |
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| Q |
313 |
acgtgagaagtatatgttaaaagtcttaaattgaatgagatataagacttaaaaatgaatttataaaatatcttgttagaataacaaccgatgatagaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26608875 |
acgtgagaagtatatgttaaaagtcttaaattgaatgag--ataagacttaaaaataattttataagatatcttgttagaataacaaccgatgatagaag |
26608778 |
T |
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| Q |
413 |
aacaactagttagaat |
428 |
Q |
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|||||||||||||||| |
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| T |
26608777 |
aacaactagttagaat |
26608762 |
T |
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