View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_1 (Length: 983)
Name: NF20790_low_1
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_1 |
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| [»] scaffold0197 (3 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Complemental strand, 3107 - 2597
Alignment:
| Q |
20 |
ggttgtgtgtcaatttcaaagttaaatgttatccaaggaaatggtggcttaatcgatgtattttgtaaatcgaagtagttgttgtttaaataaaccaata |
119 |
Q |
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| T |
3107 |
ggttgtgtgtcaatttcaaagttaaattttatccaaggaaatggtggcttaatcgatgtattttgtaaatcgaagtagttgttgtttaaataaaccaata |
3008 |
T |
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| Q |
120 |
aagtcggtcttgtgagacatagttagccctaaaactggttagtaatatggaaatagttttgtagctttttaaaccctattactat-atatctagtagac- |
217 |
Q |
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| T |
3007 |
aaatcggtcttgtgagacagagttagccctaaaactggttagtaatatggaaatagttttgtagttttttaaaccctattacttttatatctagtagaca |
2908 |
T |
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| Q |
218 |
------gatttgnnnnnnnnnaatagtatcctagttgataataaaaaggaatatcctcctacataagagaggcagataaatattcctttatgttctattg |
311 |
Q |
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| T |
2907 |
atgtaagatttgtttttttttaatagtatcctagttgataatgaaaaggaatatcctcttacataagagaggcagataaatattcctt-atgttctattg |
2809 |
T |
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| Q |
312 |
gttgatcttagtgtcataaaaaagttagctaccaatgttaataaagtttttaaattttgattatggtaacgattgttctgcaatccttgatattgtagaa |
411 |
Q |
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| T |
2808 |
cttgatcttagtgtcgtaaaaaaattagctaccaatgttaataaagtttttaaattttgattatggtaacgattgttctgcaatccttgatattgtagaa |
2709 |
T |
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| Q |
412 |
aattatagttaaatacaatcacaactatctaaattatagtcgtaaacctttgtttaaaatttaagtcattatatttccatctctttcattccttcagaat |
511 |
Q |
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| T |
2708 |
aattatagttgaatacaatcgcaactgtctaaattat-gtcgtaaatctttgtttaaaatttaagtcattatatttccatctctttcatttcttcagaat |
2610 |
T |
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| Q |
512 |
ttg-aggaatgaa |
523 |
Q |
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| T |
2609 |
ttgaaggaatgaa |
2597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 610 - 833
Target Start/End: Complemental strand, 2482 - 2259
Alignment:
| Q |
610 |
tttaccctccacacttattgggggaaattctcttttattgcaatcctttattctaggtgaatcttttgagttgtcaatgattatttgtgacttttataag |
709 |
Q |
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| T |
2482 |
tttaccctccacacttattgggggaaattctcttttattgcaatcctttattctaggtgaatcttttgagttgtcaatgattatttgtgacttttataag |
2383 |
T |
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| Q |
710 |
agttatttgtacttttacgtttctttgatatgtggctcatatagaaaaatagaaatgccaaacagctcttgataaggcatgaacagttaaatcctacccc |
809 |
Q |
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| T |
2382 |
agttctttgtacttctacgtttcattgatatgtggctcatatagaaaaatagaaatgccaaacagctcttgataaggcatgaacagttaaatcctacccc |
2283 |
T |
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| Q |
810 |
ttcaccacaaaagaagaaagtcaa |
833 |
Q |
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| T |
2282 |
ttcaccacaaaagaagaaagtcaa |
2259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 490 - 568
Target Start/End: Complemental strand, 2597 - 2517
Alignment:
| Q |
490 |
atctctttcattccttcagaatttga-ggaatgaaaatacaaattttttcttagattatcc-tagtacgacatactattag |
568 |
Q |
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| T |
2597 |
atctctttcattccttcaaaatttgaaggaatgaaaatacaaagtttttcttagattatccatagtatgacatgctattag |
2517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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