View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_10 (Length: 381)
Name: NF20790_low_10
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 45073609 - 45073422
Alignment:
| Q |
194 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgctta-------cgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
286 |
Q |
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| T |
45073609 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
45073510 |
T |
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| Q |
287 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
374 |
Q |
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| T |
45073509 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 45073786 - 45073677
Alignment:
| Q |
18 |
cttattagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgtttt |
117 |
Q |
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| T |
45073786 |
cttattagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgtttt |
45073687 |
T |
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| Q |
118 |
actaactttc |
127 |
Q |
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| T |
45073686 |
actaactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 8880468 - 8880281
Alignment:
| Q |
194 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttac-------gttaactt-agtttgtgttctgcagctaacaaactcatggttgg |
285 |
Q |
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| T |
8880468 |
gttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaactttagcttgtgttctgcagctaacaaacttatagttgg |
8880370 |
T |
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| Q |
286 |
atttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
374 |
Q |
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| T |
8880369 |
atttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 8880647 - 8880538
Alignment:
| Q |
18 |
cttattagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgtttt |
117 |
Q |
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|||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8880647 |
cttattagtcagctcgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgtttt |
8880548 |
T |
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| Q |
118 |
actaactttc |
127 |
Q |
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|||||||||| |
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| T |
8880547 |
actaactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 8884749 - 8884662
Alignment:
| Q |
18 |
cttattagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaag |
105 |
Q |
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||||||| |||||| || |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
8884749 |
cttattactcagctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 8884201 - 8884081
Alignment:
| Q |
257 |
tgttctgcagctaacaaactcatggttggatttat---tccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccattt |
353 |
Q |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgccggtttatttccattgctttcgagcggactactgccatta |
8884102 |
T |
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| Q |
354 |
cttgaggttgaagaattatct |
374 |
Q |
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||| |||||||||| ||||| |
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| T |
8884101 |
cttacggttgaagaaatatct |
8884081 |
T |
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