View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_16 (Length: 239)
Name: NF20790_low_16
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 6179182 - 6178963
Alignment:
| Q |
2 |
cgacttgaattcgtcccttgaaataaaaagataggggtgccaaatcgctgcagcaattggactgaactggaaggcccgctggctgtgtgaaactagctac |
101 |
Q |
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| T |
6179182 |
cgacttgaatttgtcccttgaaataaaaagataggggtgccaaatcgctgcagcaattggactgaactggaaggcccgctggctgtgtgaaactagctac |
6179083 |
T |
|
| Q |
102 |
catacatacatctcacaaccagccttgtatattatcctattcatacctccctcccctctttttacaccttcctccccaaactggatgaaactagctacca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179082 |
catacatacatctcacaaccagccttgtatattatcgtattcacacctccctcccctctttttacaccttcctccccaaactggatgaaactagctacca |
6178983 |
T |
|
| Q |
202 |
ctgtttcagctaccagatgg |
221 |
Q |
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|||||||||||||||||||| |
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| T |
6178982 |
ctgtttcagctaccagatgg |
6178963 |
T |
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