View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_4 (Length: 492)
Name: NF20790_low_4
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 273 - 481
Target Start/End: Complemental strand, 11856472 - 11856262
Alignment:
| Q |
273 |
actcattccctgcatacatttaggatataataaggatttctttgatcttgggactttgattcaggcactgatgtagcaggagaggttgtagaggttggac |
372 |
Q |
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||||||||| ||| ||| ||||||||||| | |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11856472 |
actcattccatgcttactcttaggatataacatagattcttttgctcttgggactttgattcaggcactgatgtatcaggagaggttgtagaggttggac |
11856373 |
T |
|
| Q |
373 |
agcaagttaaggattttaaagttggagacaaagttattaccaaactcacaaatccagtacttatctc--tttctatcacttctttaggttactgttttta |
470 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11856372 |
cgcaagtcaacgattttaaagttggagacaaagttattaccaaactcacaaatccagtacttatctcaatttctatcacttctttaggttactgttttta |
11856273 |
T |
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| Q |
471 |
atttttcctat |
481 |
Q |
| |
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||||||||||| |
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| T |
11856272 |
atttttcctat |
11856262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 11856601 - 11856470
Alignment:
| Q |
109 |
atttatagcttataaaaaacaatttcactatatttgttctttgattgtaaaaatagtttttatccaatttt-ggtaggattatacttatcagggtctctt |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| |||| ||||||||||||||||| ||||| |
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| T |
11856601 |
atttatagcttataaaaaataatttcactatatttgttgtttgattgtaaaaatagtttgtatcgaattttcggtatgattatacttatcagggcctctt |
11856502 |
T |
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| Q |
208 |
ttctctggaaaccgaaggattatatttatact |
239 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11856501 |
ttctctggaaaccgaaggattatatttatact |
11856470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 297 - 468
Target Start/End: Complemental strand, 11842056 - 11841885
Alignment:
| Q |
297 |
atataataaggatttctttgatcttgggactttgattcaggcactgatgtagcaggagaggttgtagaggttggacagcaagttaaggattttaaagttg |
396 |
Q |
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||||||| | |||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||| ||| || |
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| T |
11842056 |
atataattaagattcctttgctcttgggactttgattcaggcactgatgtagctggagaggtggtagaggttggaccacaagtcaaggatttcaaatctg |
11841957 |
T |
|
| Q |
397 |
gagacaaagttattaccaaactcacaaatccagtacttatctctttctatcacttctttaggttactgtttt |
468 |
Q |
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| T |
11841956 |
gcgacaaagttattgctaaactcacacatcaagtacttatctctttctttcacttccttaggtttctgtttt |
11841885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 11856811 - 11856723
Alignment:
| Q |
20 |
atatagggtttcaatagaataaaaaagagacggctagggtttcaatattgtatcaatggcatagcataacatagattataaactttagg |
108 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11856811 |
atatagggtttcaatagaataacaaagagacgactagggtttcaatattgtatcaatggcatagcataacatagattataaactttagg |
11856723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 313 - 440
Target Start/End: Complemental strand, 11802145 - 11802018
Alignment:
| Q |
313 |
tttgatcttgggactttgattcaggcactgatgtagcaggagaggttgtagaggttggacagcaagttaaggattttaaagttggagacaaagttattac |
412 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||||||| | |
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| T |
11802145 |
tttgctcttgggaatttgattcaggcactgatgtagcaggagaggttgtagagattggagaacaagtcaaggattttaaagttggagataaagttattgc |
11802046 |
T |
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| Q |
413 |
caaactcacaaatccagtacttatctct |
440 |
Q |
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||||||| |||| ||||| ||||||| |
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| T |
11802045 |
taaactcaacaatctagtacctatctct |
11802018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 11431301 - 11431170
Alignment:
| Q |
324 |
gactttgattcaggcactgatgtagcaggagaggttgtagaggttggacagcaagttaaggattttaaagttggagacaaagttattaccaaactcacaa |
423 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||| | ||||||| | |
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| T |
11431301 |
gactttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgctaaactcaaca |
11431202 |
T |
|
| Q |
424 |
atccagtacttatctctttctatcacttcttt |
455 |
Q |
| |
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||| |||| ||||||||||| | |||||||| |
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| T |
11431201 |
atcaagtaagtatctctttcttttacttcttt |
11431170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 455
Target Start/End: Original strand, 11564165 - 11564296
Alignment:
| Q |
324 |
gactttgattcaggcactgatgtagcaggagaggttgtagaggttggacagcaagttaaggattttaaagttggagacaaagttattaccaaactcacaa |
423 |
Q |
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|
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||| | ||||||| | |
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| T |
11564165 |
gactttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgctaaactcaaca |
11564264 |
T |
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| Q |
424 |
atccagtacttatctctttctatcacttcttt |
455 |
Q |
| |
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||| |||| ||||||||||| | |||||||| |
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| T |
11564265 |
atcaagtaagtatctctttcttttacttcttt |
11564296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 11808106 - 11808062
Alignment:
| Q |
328 |
ttgattcaggcactgatgtagcaggagaggttgtagaggttggac |
372 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
11808106 |
ttgattcaggcactgatgtagcaggagaggtagtagaagttggac |
11808062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 14516711 - 14516776
Alignment:
| Q |
35 |
agaataaaaaagagacggctagggtttcaatattgtatcaatggcatagcataacatagattataaac |
102 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||| ||||| |||| |
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| T |
14516711 |
agaataacaaagagacggctagggtttcaatat--tatcaatgacttagcataacatcgattacaaac |
14516776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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