View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_5 (Length: 474)
Name: NF20790_low_5
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 193 - 457
Target Start/End: Complemental strand, 4652144 - 4651879
Alignment:
| Q |
193 |
ccagacttttgttactctcatgaagaagcctccaaa-gccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4652144 |
ccagacttttgttactctcatgaagaagcctccaaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccac |
4652045 |
T |
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| Q |
292 |
aaaacatgctttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttat |
391 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652044 |
aaaacatgctttttgtatatggcacattactgctaaattgagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttat |
4651945 |
T |
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| Q |
392 |
aagctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtac |
457 |
Q |
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| T |
4651944 |
aagctctaccagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtac |
4651879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 4652324 - 4652238
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
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| T |
4652324 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatctctctc |
4652238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 194 - 457
Target Start/End: Complemental strand, 16149535 - 16149272
Alignment:
| Q |
194 |
cagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccacaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16149535 |
cagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccacaa |
16149436 |
T |
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| Q |
294 |
aacatgctttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttataa |
393 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
16149435 |
aacatgctttttgtatatggcacattactgctaaatttagtggttggtttacttcaattcttcgaaatagatatttctcatggtgtgctgatttttataa |
16149336 |
T |
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| Q |
394 |
gctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtac |
457 |
Q |
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|
| T |
16149335 |
gctttacaagcttgacaatattgatgatttcgaagaagaatggattataattgtttccaagtac |
16149272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 16149715 - 16149629
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
16149715 |
aatattgtttggttgtgcgctcattcgaaatgaaacggtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
16149629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 193 - 457
Target Start/End: Original strand, 23302525 - 23302789
Alignment:
| Q |
193 |
ccagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccaca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23302525 |
ccagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccaca |
23302624 |
T |
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| Q |
293 |
aaacatgctttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttata |
392 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||| ||| |
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| T |
23302625 |
aaacatgctttttgtatatggcacattactgctaaatttagtggttggattacttcaattcttcgaaatagatatttctcatggtgtgctgattttcata |
23302724 |
T |
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| Q |
393 |
agctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtac |
457 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23302725 |
agctttacaagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtac |
23302789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 23302344 - 23302430
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
23302344 |
aatattgtttggttgtgcgctcattcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
23302430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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